RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1215813", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1215813 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29535800 29535800 PRJNA1215813_P_NODE_3090_length_430_cov_2.176471_g3010_i0 PRJNA1215813 3090 430 2.176471 9.3588253 Simkaniaceae bacterium 2698248 Bacteria Bacteria 140 1.05e-35   NR QVL54756.1 2698248 g3010 i0 50.4 0.955813953488372 137 66 94.2 1 2 406 451 587 QVL54756.1 MAG: hypothetical protein KFB95_05390 [Simkaniaceae bacterium] diamond 411 140 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
32190876 32190876 PRJNA1215813_P_NODE_8338_length_271_cov_1.186869_g8258_i0 PRJNA1215813 8338 271 1.186869 3.21641499 Parachlamydia sp. 2052048 Bacteria Bacteria 79.3 5.8e-15   NR MCE2982972.1 2052048 g8258 i0 41.6 2.97785977859779 89 50 98.5 1 4 270 62 148 MCE2982972.1 dual specificity protein phosphatase family protein [Parachlamydia sp.] diamond 807 79.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;