RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1215813" and tax_clade = "DHVE2 group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • DHVE2 group · 1 ✖

bioproject 1

  • PRJNA1215813 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9259784 9259784 PRJNA1215813_P_NODE_7608_length_285_cov_1.103774_g7528_i0 PRJNA1215813 7608 285 1.103774 3.1457559 Candidatus Aciduliprofundum boonei 379547 Archaea Archaea 52.8 0.026   NTclustered gi|289533465|gb|CP001941.1| 439481 g7528 i0 100 0.0982456140350877 28 0 10 0 86 113 574992 574965 Aciduliprofundum boonei T469, complete genome blastn 28 52.8 1 Archaea DHVE2 group Methanobacteriati Thermoplasmatota       Candidatus Aciduliprofundum Candidatus Aciduliprofundum boonei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;