RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1215813", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Sumerlaeota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1215813 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27799416 27799416 PRJNA1215813_P_NODE_3904_length_386_cov_1.047923_g3824_i0 PRJNA1215813 3904 386 1.047923 4.04498278 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 127 1.1e-32   NR MBX7246701.1 2315423 g3824 i0 54.7 4.07253886010363 106 46 82.4 1 321 4 2 105 MBX7246701.1 NAD(P)-dependent alcohol dehydrogenase [Candidatus Sumerlaeaceae bacterium] diamond 1572 127 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium
27893861 27893861 PRJNA1215813_P_NODE_8005_length_277_cov_2.122549_g7925_i0 PRJNA1215813 8005 277 2.122549 5.87946073 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 109 1.54e-25   NR MCX7719145.1 2315423 g7925 i0 61.4 0.89891696750902494 83 29 86.6 1 1 240 234 316 MCX7719145.1 fibronectin type III domain-containing protein [Candidatus Sumerlaeaceae bacterium] diamond 249 109 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium
29220215 29220215 PRJNA1215813_P_NODE_709_length_825_cov_3.252660_g645_i0 PRJNA1215813 709 825 3.25266 26.834445 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 326 3.319999999999999e-107   NR MBX7246531.1 2315423 g645 i0 55.1 10.9636363636364 274 121 99.6 1 825 4 117 388 MBX7246531.1 elongation factor Tu [Candidatus Sumerlaeaceae bacterium] diamond 9045 326 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;