RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1215774" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1215774 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28272640 28272640 PRJNA1215774_P_NODE_67086_length_254_cov_0.850829_g66766_i0 PRJNA1215774 67086 254 0.850829 2.16110566 Desulfuromonadales bacterium 2099678 Bacteria Bacteria 42.7 0.0397   NR MFA5517359.1 2099678 g66766 i0 44.1 0.696850393700787 59 27 62.6 2 44 202 52 110 MFA5517359.1 DMT family transporter [Desulfuromonadales bacterium] diamond 177 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium
31494933 31494933 PRJNA1215774_P_NODE_62696_length_264_cov_1.612565_g62376_i0 PRJNA1215774 62696 264 1.612565 4.2571716 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 108 4.62e-25   NR MDQ7830636.1 2049043 g62376 i0 64.9 0.840909090909091 74 26 84.1 0 43 264 2 75 MDQ7830636.1 type I DNA topoisomerase [Desulfovibrionaceae bacterium] diamond 222 108 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;