RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1215774" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1215774 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27230687 27230687 PRJNA1215774_P_NODE_82563_length_242_cov_0.911243_g82243_i0 PRJNA1215774 82563 242 0.911243 2.20520806 Anaerolineae bacterium 2052143 Bacteria Bacteria 51.2 2.17e-5   NR MCL6509849.1 2052143 g82243 i0 52.7 0.681818181818182 55 23 65.7 2 84 242 38 91 MCL6509849.1 hypothetical protein [Anaerolineae bacterium] diamond 165 51.2 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
30452071 30452071 PRJNA1215774_P_NODE_71533_length_249_cov_0.875000_g71213_i0 PRJNA1215774 71533 249 0.875 2.17875 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 82 5.9e-16   NR HTL54975.1 2952938 g71213 i0 63.5 3.59036144578313 74 24 89.2 1 24 245 399 469 HTL54975.1 hypothetical protein [Candidatus Limnocylindrales bacterium] diamond 894 82 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium
31083774 31083774 PRJNA1215774_P_NODE_82955_length_242_cov_0.911243_g82635_i0 PRJNA1215774 82955 242 0.911243 2.20520806 Anaerolineales bacterium 2073117 Bacteria Bacteria 109 1.38e-25   NR HRK89317.1 2073117 g82635 i0 67.5 0.991735537190083 80 26 99.2 0 2 241 331 410 HRK89317.1 AAA family ATPase [Anaerolineales bacterium] diamond 240 109 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31209626 31209626 PRJNA1215774_P_NODE_68195_length_251_cov_1.696629_g67875_i0 PRJNA1215774 68195 251 1.696629 4.25853879 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 138 1.38e-36   NR UCG10232.1 2026734 g67875 i0 78 0.9800796812749 82 18 98 0 2 247 413 494 UCG10232.1 MAG: hypothetical protein JSW30_05860 [Dehalococcoidia bacterium] diamond 246 138 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;