RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1215774", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1215774 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2882372 2882372 PRJNA1215774_P_NODE_68523_length_251_cov_0.865169_g68203_i0 PRJNA1215774 68523 251 0.865169 2.17157419 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 198 2.76e-46   NTclustered gi|2893356059|emb|OZ220482.1| 2651171 g68203 i0 82.96 11.3784860557769 223 34 88 4 31 251 215826 216046 MAG: Thermoanaerobaculia bacterium isolate 1ba308f5-42e2-4878-81ff-2dc7ade272f8 genome assembly, chromosome: 1 blastn 2856 198 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
20733116 20733116 PRJNA1215774_P_NODE_9297_length_720_cov_1.604328_g8996_i0 PRJNA1215774 9297 720 1.604328 11.5511616 Terriglobus saanensis 870903 Bacteria Bacteria 215 8.68e-51   NTclustered gi|319923767|gb|CP002467.1| 401053 g8996 i0 78.593 0.454166666666667 327 68 45 2 394 719 4483386 4483061 Terriglobus saanensis SP1PR4, complete genome blastn 327 215 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus saanensis
28083299 28083299 PRJNA1215774_P_NODE_69945_length_250_cov_0.870056_g69625_i0 PRJNA1215774 69945 250 0.870056 2.17514 Acidobacteriota bacterium 1978231 Bacteria Bacteria 52.8 1.18e-5   NR NDD65331.1 1978231 g69625 i0 32.9 2.052 85 54 98.4 3 1 246 247 331 NDD65331.1 AAA family ATPase [Acidobacteriota bacterium] diamond 513 52.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31178257 31178257 PRJNA1215774_P_NODE_78315_length_245_cov_0.895349_g77995_i0 PRJNA1215774 78315 245 0.895349 2.19360505 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 137 1.96e-35   NR HEY8560118.1 2283092 g77995 i0 80.2 2.97551020408163 81 16 99.2 0 243 1 282 362 HEY8560118.1 glycoside hydrolase family 3 C-terminal domain-containing protein [Pyrinomonadaceae bacterium] diamond 729 137 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;