RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1215774", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA1215774 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27167352 27167352 PRJNA1215774_P_NODE_83282_length_242_cov_0.911243_g82962_i0 PRJNA1215774 83282 242 0.911243 2.20520806 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 75.9 7.42e-14   NR MBL9167712.1 2026801 g82962 i0 76.6 0.582644628099174 47 11 58.3 0 142 2 1 47 MBL9167712.1 aspartate aminotransferase family protein [Verrucomicrobiales bacterium] diamond 141 75.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28399135 28399135 PRJNA1215774_P_NODE_78646_length_245_cov_0.866279_g78326_i0 PRJNA1215774 78646 245 0.866279 2.12238355 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 129 1.09e-32   NR MEN9573224.1 2026799 g78326 i0 78.8 1.97142857142857 80 17 98 0 4 243 565 644 MEN9573224.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 483 129 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28904080 28904080 PRJNA1215774_P_NODE_74748_length_247_cov_0.885057_g74428_i0 PRJNA1215774 74748 247 0.885057 2.18609079 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52 2.1e-5   NR MEI7730892.1 2026799 g74428 i0 71.1 3.92307692307692 38 11 46.2 0 129 242 412 449 MEI7730892.1 ComEC/Rec2 family competence protein [Verrucomicrobiota bacterium] diamond 969 52 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28904081 28904081 PRJNA1215774_P_NODE_80828_length_243_cov_0.905882_g80508_i0 PRJNA1215774 80828 243 0.905882 2.20129326 Pedosphaera sp. 2024890 Bacteria Bacteria 114 3.55e-29   NR MSU32133.1 2024890 g80508 i0 69.2 0.962962962962963 78 24 96.3 0 5 238 12 89 MSU32133.1 methyltransferase domain-containing protein [Pedosphaera sp.] diamond 234 114 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
29157100 29157100 PRJNA1215774_P_NODE_76169_length_246_cov_0.890173_g75849_i0 PRJNA1215774 76169 246 0.890173 2.18982558 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 98.6 8.68e-22   NR HEY2800216.1 2201154 g75849 i0 55 0.975609756097561 80 36 97.6 0 2 241 1046 1125 HEY2800216.1 autotransporter-associated beta strand repeat-containing protein [Chthoniobacterales bacterium] diamond 240 98.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29661644 29661644 PRJNA1215774_P_NODE_41890_length_325_cov_3.214286_g41570_i0 PRJNA1215774 41890 325 3.214286 10.4464295 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.9 0.0379   NR MBI5692837.1 2026799 g41570 i0 46.5 0.396923076923077 43 20 36.9 1 155 274 229 271 MBI5692837.1 PQQ-binding-like beta-propeller repeat protein [Verrucomicrobiota bacterium] diamond 129 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30357561 30357561 PRJNA1215774_P_NODE_73852_length_248_cov_0.880000_g73532_i0 PRJNA1215774 73852 248 0.88 2.1824 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 59.7 4.35e-8   NR MDC0048616.1 2026799 g73532 i0 50 2.84274193548387 64 30 75 1 188 3 2 65 MDC0048616.1 ubiquitin-like protein [Verrucomicrobiota bacterium] diamond 705 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31621232 31621232 PRJNA1215774_P_NODE_79236_length_244_cov_0.900585_g78916_i0 PRJNA1215774 79236 244 0.900585 2.1974274 Prosthecobacter sp. 1965333 Bacteria Bacteria 51.2 2.19e-6   NR HYF37543.1 1965333 g78916 i0 49.1 0.700819672131147 57 27 67.6 1 243 79 8 64 HYF37543.1 hypothetical protein [Prosthecobacter sp.] diamond 171 51.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;