RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1215774", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA1215774 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4157944 4157944 PRJNA1215774_P_NODE_34424_length_359_cov_10.828671_g34104_i0 PRJNA1215774 34424 359 10.828671 38.87492889 Rhizopus stolonifer 4846 Fungi Fungi 647 0   NTclustered gi|380865584|gb|JQ606829.1| 4846 g34104 i0 99.164 98.3259052924791 359 3 100 0 1 359 124 482 Rhizopus stolonifer strain NRRL A-17183 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 35299 647 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
4873920 4873920 PRJNA1215774_P_NODE_86504_length_214_cov_5.312057_g86184_i0 PRJNA1215774 86504 214 5.312057 11.36780198 Rhizopus 4842 Fungi Fungi 396 7.559999999999996e-106   NTclustered gi|108744661|gb|DQ536474.1| 4846 g86184 i0 100 100 214 0 100 0 1 214 1649 1436 Rhizopus stolonifer isolate AFTOL-ID 632 18S small subunit ribosomal RNA gene, partial sequence blastn 21400 396 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
10534751 10534751 PRJNA1215774_P_NODE_30689_length_381_cov_5.840909_g30369_i0 PRJNA1215774 30689 381 5.840909 22.25386329 Rhizopus stolonifer 4846 Fungi Fungi 702 0   NTclustered gi|2199610414|gb|OM837198.1| 4846 g30369 i0 100 96.0157480314961 380 0 99 0 2 381 700 321 Rhizopus stolonifer strain KKP 486 large subunit ribosomal RNA gene, partial sequence blastn 36582 702 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
15633691 15633691 PRJNA1215774_P_NODE_20573_length_474_cov_9.783042_g20253_i0 PRJNA1215774 20573 474 9.783042 46.37161908 Rhizopus stolonifer 4846 Fungi Fungi 859 0   NTclustered gi|82398553|gb|DQ273817.1| 4846 g20253 i0 99.368 102.755274261603 475 2 100 1 1 474 1561 2035 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 48706 859 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
17623257 17623257 PRJNA1215774_P_NODE_23114_length_445_cov_2.715054_g22794_i0 PRJNA1215774 23114 445 2.715054 12.0819903 Mucor 4830 Fungi Fungi 811 0   NTclustered gi|158562441|gb|EU195421.1| 4841 g22794 i0 99.551 100 445 2 100 0 1 445 265 709 Mucor racemosus strain PTCC 5305 clone PM11 28S ribosomal RNA, partial sequence blastn 44500 817 0.99265605875153 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
18183246 18183246 PRJNA1215774_P_NODE_86515_length_213_cov_5.807143_g86195_i0 PRJNA1215774 86515 213 5.807143 12.36921459 Rhizopus stolonifer 4846 Fungi Fungi 267 6.149999999999999e-67   NTclustered gi|82398553|gb|DQ273817.1| 4846 g86195 i0 89.302 46.7042253521127 215 19 100 4 1 213 2069 2281 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 9948 267 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
25271948 25271948 PRJNA1215774_P_NODE_85120_length_240_cov_4.455090_g84800_i0 PRJNA1215774 85120 240 4.45509 10.692216 Rhizopus 4842 Fungi Fungi 444 3.05e-120   NTclustered gi|734668976|gb|KJ408540.1| 4846 g84800 i0 100 100.008333333333 240 0 100 0 1 240 55 294 Rhizopus stolonifer strain FSU9872 18S ribosomal RNA gene, partial sequence blastn 24002 444 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;