RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1215774" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA1215774 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11809669 11809669 PRJNA1215774_P_NODE_38790_length_338_cov_3.350943_g38470_i0 PRJNA1215774 38790 338 3.350943 11.32618734 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.032   NTclustered gi|1031970221|gb|CP015655.1| 85057 g38470 i0 100 0.0828402366863905 28 0 8 0 89 116 50537 50510 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
14360608 14360608 PRJNA1215774_P_NODE_81472_length_243_cov_0.905882_g81152_i0 PRJNA1215774 81472 243 0.905882 2.20129326 Rhynchobodo sp. Hamilton Lake 266815 Euglenozoa other_Eukaryota 444 3.09e-120   NTclustered gi|45739055|gb|AY490213.1| 266815 g81152 i0 99.588 100.411522633745 243 1 100 0 1 243 1851 2093 Rhynchobodo sp. Hamilton Lake 18S ribosomal RNA gene, partial sequence blastn 24400 444 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Rhynchobodo Rhynchobodo sp. Hamilton Lake
20732942 20732942 PRJNA1215774_P_NODE_74377_length_247_cov_1.586207_g74057_i0 PRJNA1215774 74377 247 1.586207 3.91793129 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 93.6 1.3700000000000002e-21   NR EPY37151.1 28005 g74057 i0 58.5 6.97165991902834 82 34 99.6 0 247 2 77 158 EPY37151.1 hypothetical protein STCU_00146 [Strigomonas culicis] diamond 1722 93.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
29283037 29283037 PRJNA1215774_P_NODE_83649_length_241_cov_1.630952_g83329_i0 PRJNA1215774 83649 241 1.630952 3.93059432 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 47.8 5.66e-4   NR KAJ9440558.1 91374 g83329 i0 38.7 3.59751037344398 62 38 77.2 0 238 53 42 103 KAJ9440558.1 hypothetical protein DIPPA_22605 [Diplonema papillatum] diamond 867 47.8 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
29902066 29902066 PRJNA1215774_P_NODE_79691_length_244_cov_0.900585_g79371_i0 PRJNA1215774 79691 244 0.900585 2.1974274 root 1 Root_unresolved Root_unresolved 95.9 1.33e-21   NR XP_044559853.1 5763 g79371 i0 48.1 7.19262295081967 81 42 99.6 0 1 243 167 247 XP_044559853.1 uncharacterized protein FDP41_005893 [Naegleria fowleri] diamond 1755 95.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;