RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1214993" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1214993 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11808940 11808940 PRJNA1214993_P_NODE_17230_length_270_cov_1.187817_g17044_i0 PRJNA1214993 17230 270 1.187817 3.2071059 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 143 2.1199999999999996e-37   NR MBL9115668.1 2026800 g17044 i0 74.4 11 90 23 100 0 1 270 337 426 MBL9115668.1 NADP-dependent isocitrate dehydrogenase [Verrucomicrobiaceae bacterium] diamond 2970 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
19456383 19456383 PRJNA1214993_P_NODE_20796_length_251_cov_0.865169_g20610_i0 PRJNA1214993 20796 251 0.865169 2.17157419 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 448 2.48e-121   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g20610 i0 98.805 288.05577689243 251 3 100 0 1 251 1032 782 Luteolibacter sp. SL250 chromosome blastn 72302 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
26945998 26945998 PRJNA1214993_P_NODE_21382_length_250_cov_0.870056_g21196_i0 PRJNA1214993 21382 250 0.870056 2.17514 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 122 1.15e-31   NR RYD65414.1 2026800 g21196 i0 78.3 0.996 83 16 99.6 1 2 250 103 183 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 249 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27407779 27407779 PRJNA1214993_P_NODE_11343_length_327_cov_1.228346_g11157_i0 PRJNA1214993 11343 327 1.228346 4.01669142 Rariglobus 2706524 Bacteria Bacteria 46.6 0.00448   NR MFA6286022.1 2006848 g11157 i0 32.3 2.55045871559633 93 63 85.3 0 28 306 704 796 MFA6286022.1 fibronectin type III domain-containing protein [Opitutaceae bacterium] diamond 834 47 0.991489361702128 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31652710 31652710 PRJNA1214993_P_NODE_14937_length_287_cov_1.378505_g14751_i0 PRJNA1214993 14937 287 1.378505 3.95630935 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 43.1 0.0365   NR HEX3818319.1 2201154 g14751 i0 39.1 1.44250871080139 69 38 69 3 65 262 155 222 HEX3818319.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 414 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
32475695 32475695 PRJNA1214993_P_NODE_20539_length_251_cov_0.876404_g20353_i0 PRJNA1214993 20539 251 0.876404 2.19977404 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 42.7 0.0383   NR HUJ72026.1 2499141 g20353 i0 41 0.729083665338645 61 23 57.4 3 13 156 141 201 HUJ72026.1 4-alpha-glucanotransferase [Verrucomicrobiia bacterium] diamond 183 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32809517 32809517 PRJNA1214993_P_NODE_19120_length_256_cov_1.344262_g18934_i0 PRJNA1214993 19120 256 1.344262 3.44131072 Pseudomonadati 3379134 Bacteria Bacteria 148 7.55e-40   NR MEI6715620.1 2026799 g18934 i0 84.5 9.9375 84 13 98.4 0 2 253 122 205 MEI6715620.1 fumarate hydratase [Verrucomicrobiota bacterium] diamond 2544 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;