RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1214993" and tax_phylum = "Olpidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1214993 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23282409 23282409 PRJNA1214993_P_NODE_1159_length_935_cov_1.484919_g1022_i0 PRJNA1214993 1159 935 1.484919 13.88399265 Olpidium brassicae 70189 Fungi Fungi 774 0   NTclustered gi|358030887|dbj|AB609177.1| 70189 g1022 i0 83.314 77.4149732620321 845 135 90 6 66 907 706 1547 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 72383 774 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
27862238 27862238 PRJNA1214993_P_NODE_20025_length_252_cov_1.307263_g19839_i0 PRJNA1214993 20025 252 1.307263 3.29430276 Olpidium bornovanus 278681 Fungi Fungi 145 1.55e-38   NR BAL15351.1 278681 g19839 i0 78.6 1 84 18 100 0 252 1 172 255 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 252 145 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
32273056 32273056 PRJNA1214993_P_NODE_14298_length_292_cov_1.378995_g14112_i0 PRJNA1214993 14298 292 1.378995 4.0266654 Eukaryota 2759 Fungi Fungi 131 2.24e-33   NR BAL15351.1 278681 g14112 i0 58.8 4.98287671232877 97 40 99.7 0 291 1 158 254 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 1455 131 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;