RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1214993" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1214993 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27470828 27470828 PRJNA1214993_P_NODE_25723_length_242_cov_2.497041_g25537_i0 PRJNA1214993 25723 242 2.497041 6.04283922 Giardia 5740 Fornicata other_Eukaryota 43.9 0.00308   NR ESU37000.1 5741 g25537 i0 38.6 2.78925619834711 57 29 70.7 1 9 179 32 82 ESU37000.1 Variant-specific surface protein, partial [Giardia intestinalis] diamond 675 44.3 0.99097065462754 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
29838671 29838671 PRJNA1214993_P_NODE_21331_length_250_cov_0.875706_g21145_i0 PRJNA1214993 21331 250 0.875706 2.189265 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 1.14e-27   NR KAG9391744.1 201153 g21145 i0 62.7 7.968 83 31 99.6 0 250 2 195 277 KAG9391744.1 Peptide chain release factor eRF1/aRF1 [Carpediemonas membranifera] diamond 1992 115 0.991304347826087 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;