RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1214993", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1214993 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28304366 28304366 PRJNA1214993_P_NODE_7826_length_387_cov_0.993631_g7640_i0 PRJNA1214993 7826 387 0.993631 3.84535197 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 87 6.31e-17   NR MCP4105703.1 2049433 g7640 i0 40.2 4.74418604651163 127 69 97.7 3 378 1 475 595 MCP4105703.1 M28 family peptidase [Desulfobacteraceae bacterium] diamond 1836 87 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29522996 29522996 PRJNA1214993_P_NODE_25450_length_243_cov_0.917647_g25264_i0 PRJNA1214993 25450 243 0.917647 2.22988221 Bacteria 2 Bacteria Bacteria 77.8 1.7e-15   NR RQW79298.1 46610 g25264 i0 58 1.75308641975309 69 28 84 1 206 3 21 89 RQW79298.1 MAG: glycoside hydrolase family 19 protein [Geobacter sp.] diamond 426 77.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
29851631 29851631 PRJNA1214993_P_NODE_14511_length_290_cov_1.723502_g14325_i0 PRJNA1214993 14511 290 1.723502 4.9981558 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 171 2.44e-52   NR GJM17675.1 2202153 g14325 i0 86.5 2.97931034482759 96 13 99.3 0 289 2 54 149 GJM17675.1 MAG: hypothetical protein DHS20C13_30020 [Thermodesulfobacteriota bacterium] diamond 864 171 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30546600 30546600 PRJNA1214993_P_NODE_19513_length_253_cov_1.822222_g19327_i0 PRJNA1214993 19513 253 1.822222 4.61022166 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 42.7 0.0425   NR HSO71105.1 2202153 g19327 i0 39.1 0.818181818181818 69 33 71.1 1 219 40 108 176 HSO71105.1 phenylalanine--tRNA ligase subunit beta [Thermodesulfobacteriota bacterium] diamond 207 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;