RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1214993", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1214993 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16907497 16907497 PRJNA1214993_P_NODE_23814_length_246_cov_0.890173_g23628_i0 PRJNA1214993 23814 246 0.890173 2.18982558 Spirochaetota bacterium 2202144 Bacteria Bacteria 52.8 0.022   NTclustered gi|2107719547|gb|CP070841.1| 2202144 g23628 i0 100 0.113821138211382 28 0 11 0 144 171 1549335 1549308 MAG: Spirochaetes bacterium isolate bin100 chromosome blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28733736 28733736 PRJNA1214993_P_NODE_11027_length_331_cov_1.701550_g10841_i0 PRJNA1214993 11027 331 1.70155 5.6321305 Bacteria 2 Bacteria Bacteria 47 0.00249   NR NUM41450.1 2026757 g10841 i0 41.6 1.31419939577039 77 41 69.8 2 50 280 141 213 NUM41450.1 CAP domain-containing protein [Leptospiraceae bacterium] diamond 435 47 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
29661604 29661604 PRJNA1214993_P_NODE_10770_length_335_cov_0.900763_g10584_i0 PRJNA1214993 10770 335 0.900763 3.01755605 Leptospiraceae bacterium 2026757 Bacteria Bacteria 47.8 1.1e-4   NR MCB1177358.1 2026757 g10584 i0 52.4 0.376119402985075 42 19 36.7 1 207 329 1 42 MCB1177358.1 hypothetical protein [Leptospiraceae bacterium] diamond 126 47.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
32444134 32444134 PRJNA1214993_P_NODE_11519_length_324_cov_2.450199_g11333_i0 PRJNA1214993 11519 324 2.450199 7.93864476 Spirochaetes bacterium GWB1_59_5 1802176 Bacteria Bacteria 50.4 1.03e-4   NR OHD18884.1 1802176 g11333 i0 38.7 0.981481481481482 106 55 88.9 2 296 9 14 119 OHD18884.1 MAG: hypothetical protein A2Y38_14560 [Spirochaetes bacterium GWB1_59_5] diamond 318 50.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetes bacterium GWB1_59_5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;