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contig_metadata

31 rows where bioproject = "PRJNA1214993", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 31 ✖

tax_kingdom 1

  • Metazoa · 31 ✖

tax_clade 1

bioproject 1

  • PRJNA1214993 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2881209 2881209 PRJNA1214993_P_NODE_17743_length_266_cov_1.373057_g17557_i0 PRJNA1214993 17743 266 1.373057 3.65233162 Caenorhabditis briggsae 6238 Nematoda Nematoda 252 2.23e-62   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g17557 i0 83.969 88.2105263157895 262 42 98 0 4 265 334 73 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 23464 252 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
4157243 4157243 PRJNA1214993_P_NODE_11424_length_326_cov_0.924901_g11238_i0 PRJNA1214993 11424 326 0.924901 3.01517726 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 116 1.37e-30   NR KHN76788.1 6265 g11238 i0 57.6 13.260736196319 99 42 91.1 0 297 1 15 113 KHN76788.1 40S ribosomal protein S15 [Toxocara canis] diamond 4323 116 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
4157348 4157348 PRJNA1214993_P_NODE_2764_length_633_cov_2.344643_g2586_i0 PRJNA1214993 2764 633 2.344643 14.84159019 Rhabditida 6236 Nematoda Nematoda 205 1.06e-62   NR XP_003144033.2 7209 g2586 i0 55.5 3.96682464454976 209 81 99.1 1 1 627 35 231 XP_003144033.2 50S ribosomal protein L13e [Loa loa] diamond 2511 206 0.995145631067961 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
6148204 6148204 PRJNA1214993_P_NODE_11985_length_318_cov_2.032653_g11799_i0 PRJNA1214993 11985 318 2.032653 6.46383654 Pristionchus 54125 Nematoda Nematoda 134 1.03e-26   NTclustered gi|150984517|gb|EF634901.1| 376546 g11799 i0 78.475 3.60062893081761 223 34 68 13 80 295 49 264 Pristionchus marianneae small subunit ribosomal protein 20 (rps-20) mRNA, complete cds blastn 1145 135 0.992592592592593 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus marianneae
7983760 7983760 PRJNA1214993_P_NODE_24047_length_245_cov_0.906977_g23861_i0 PRJNA1214993 24047 245 0.906977 2.22209365 Rhabditida 6236 Nematoda Nematoda 96.7 8.469999999999998e-24   NR KAK5972802.1 6319 g23861 i0 79.3 7.23673469387755 58 12 71 0 71 244 14 71 KAK5972802.1 40S ribosomal protein S14 [Trichostrongylus colubriformis] diamond 1773 97.1 0.995880535530381 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
9258211 9258211 PRJNA1214993_P_NODE_11748_length_321_cov_2.516129_g11562_i0 PRJNA1214993 11748 321 2.516129 8.07677409 Pristionchus fukushimae 1355912 Nematoda Nematoda 202 2.83e-47   NTclustered gi|524845342|gb|KC819381.1| 1355912 g11562 i0 78.914 18.1028037383178 313 54 96 10 3 309 307 1 Pristionchus fukushimae strain RS5595 subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 5811 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fukushimae
9258345 9258345 PRJNA1214993_P_NODE_6488_length_422_cov_1.822350_g6303_i0 PRJNA1214993 6488 422 1.82235 7.690317 Opisthokonta 33154 Nematoda Nematoda 207 2.4500000000000002e-65   NR VDP19351.1 241478 g6303 i0 71.9 2.96445497630332 139 39 98.8 0 2 418 68 206 VDP19351.1 unnamed protein product [Soboliphyme baturini] diamond 1251 209 0.990430622009569 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
10534166 10534166 PRJNA1214993_P_NODE_19889_length_253_cov_0.866667_g19703_i0 PRJNA1214993 19889 253 0.866667 2.19266751 Metazoa 33208 Nematoda Nematoda 134 3.05e-34   NR KAL1241445.1 6334 g19703 i0 84.3 126.9604743083 83 12 98.4 1 2 250 232 313 KAL1241445.1 Heat shockprotein [Trichinella spiralis] diamond 32121 134 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
11808961 11808961 PRJNA1214993_P_NODE_20570_length_251_cov_0.876404_g20384_i0 PRJNA1214993 20570 251 0.876404 2.19977404 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 131 8.27e-34   NR VDN84028.1 6280 g20384 i0 72.3 8.90438247011952 83 23 99.2 0 2 250 133 215 VDN84028.1 unnamed protein product [Brugia pahangi] diamond 2235 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
15073062 15073062 PRJNA1214993_P_NODE_7392_length_396_cov_5.024768_g7206_i0 PRJNA1214993 7392 396 5.024768 19.89808128 Trichuris trichiura 36087 Nematoda Nematoda 178 1.0299999999999999e-54   NR CDW60131.1 36087 g7206 i0 64.1 3.87878787878788 128 46 97 0 12 395 1 128 CDW60131.1 60S ribosomal protein L27a [Trichuris trichiura] diamond 1536 178 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
19456454 19456454 PRJNA1214993_P_NODE_4976_length_479_cov_2.243842_g4791_i0 PRJNA1214993 4976 479 2.243842 10.74800318 Nematoda 6231 Nematoda Nematoda 153 6.84e-41   NR VDD92756.1 51028 g4791 i0 57.9 10.3528183716075 133 51 82.7 3 464 69 346 474 VDD92756.1 unnamed protein product [Enterobius vermicularis] diamond 4959 153 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
22007089 22007089 PRJNA1214993_P_NODE_18538_length_260_cov_1.625668_g18352_i0 PRJNA1214993 18538 260 1.625668 4.2267368 Acrostichus sp. RS5083 669107 Nematoda Nematoda 182 2.9e-41   NTclustered gi|256709251|gb|GQ422278.1| 669107 g18352 i0 82.297 5.30769230769231 209 37 80 0 3 211 254 46 Acrostichus sp. RS5083 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 1380 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. RS5083
26901822 26901822 PRJNA1214993_P_NODE_9601_length_353_cov_1.100000_g9415_i0 PRJNA1214993 9601 353 1.1 3.883 root 1 Root_unresolved Root_unresolved 100 8.359999999999999e-23   NR KFD56150.1 68888 g9415 i0 39.5 11.3966005665722 119 69 99.4 2 351 1 134 251 KFD56150.1 hypothetical protein M513_02928 [Trichuris suis] diamond 4023 100 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
27167328 27167328 PRJNA1214993_P_NODE_21302_length_250_cov_0.881356_g21116_i0 PRJNA1214993 21302 250 0.881356 2.20339 Soboliphyme baturini 241478 Nematoda Nematoda 43.9 0.0158   NR VDP08693.1 241478 g21116 i0 42.2 0.54 45 26 54 0 157 23 237 281 VDP08693.1 unnamed protein product [Soboliphyme baturini] diamond 135 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
27483464 27483464 PRJNA1214993_P_NODE_19763_length_253_cov_0.866667_g19577_i0 PRJNA1214993 19763 253 0.866667 2.19266751 Diploscapter pachys 2018661 Nematoda Nematoda 79.3 3.7e-15   NR PAV64631.1 2018661 g19577 i0 50.7 0.841897233201581 71 35 84.2 0 213 1 107 177 PAV64631.1 hypothetical protein WR25_01704 [Diploscapter pachys] diamond 213 79.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
27641535 27641535 PRJNA1214993_P_NODE_18244_length_262_cov_1.650794_g18058_i0 PRJNA1214993 18244 262 1.650794 4.32508028 Diploscapter pachys 2018661 Nematoda Nematoda 117 1.94e-28   NR PAV80360.1 2018661 g18058 i0 65.5 6.97328244274809 87 30 99.6 0 261 1 168 254 PAV80360.1 hypothetical protein WR25_20646 isoform A [Diploscapter pachys] diamond 1827 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
27830720 27830720 PRJNA1214993_P_NODE_18404_length_261_cov_1.356383_g18218_i0 PRJNA1214993 18404 261 1.356383 3.54015963 Anisakis simplex 6269 Nematoda Nematoda 59.7 3.43e-9   NR VDK28727.1 6269 g18218 i0 39.8 1.06896551724138 93 49 98.9 2 258 1 6 98 VDK28727.1 unnamed protein product [Anisakis simplex] diamond 279 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
28165359 28165359 PRJNA1214993_P_NODE_15725_length_281_cov_1.500000_g15539_i0 PRJNA1214993 15725 281 1.5 4.215 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.6 7.63e-4   NR MFH4982730.1 75299 g15539 i0 39.6 8.42348754448399 53 32 56.6 0 260 102 42 94 MFH4982730.1 hypothetical protein [Gnathostoma spinigerum] diamond 2367 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
29125592 29125592 PRJNA1214993_P_NODE_25029_length_244_cov_0.900585_g24843_i0 PRJNA1214993 25029 244 0.900585 2.1974274 Caenorhabditis remanei 31234 Nematoda Nematoda 129 3.8e-35   NR XP_053592725.1 31234 g24843 i0 77.2 6.79918032786885 79 18 97.1 0 3 239 60 138 XP_053592725.1 hypothetical protein GCK72_003479 [Caenorhabditis remanei] diamond 1659 129 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
29314752 29314752 PRJNA1214993_P_NODE_10929_length_333_cov_1.061538_g10743_i0 PRJNA1214993 10929 333 1.061538 3.53492154 Caenorhabditis angaria 860376 Nematoda Nematoda 66.6 4.12e-10   NR CAI5437589.1 860376 g10743 i0 41 0.900900900900901 100 52 84.7 3 49 330 119 217 CAI5437589.1 unnamed protein product [Caenorhabditis angaria] diamond 300 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
29504094 29504094 PRJNA1214993_P_NODE_17330_length_269_cov_1.403061_g17144_i0 PRJNA1214993 17330 269 1.403061 3.77423409 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 65.5 5.16e-10   NR CAD6184355.1 2777116 g17144 i0 48.6 6.21189591078067 70 36 78.1 0 211 2 73 142 CAD6184355.1 unnamed protein product [Caenorhabditis auriculariae] diamond 1671 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
29965163 29965163 PRJNA1214993_P_NODE_20251_length_252_cov_0.871508_g20065_i0 PRJNA1214993 20251 252 0.871508 2.19620016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.6 3.78e-22   NR KFD46597.1 68888 g20065 i0 63.6 15.5952380952381 77 27 91.7 1 233 3 4 79 KFD46597.1 hypothetical protein M513_12531 [Trichuris suis] diamond 3930 94.4 0.991525423728813 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30198814 30198814 PRJNA1214993_P_NODE_16632_length_274_cov_1.552239_g16446_i0 PRJNA1214993 16632 274 1.552239 4.25313486 Teladorsagia circumcincta 45464 Nematoda Nematoda 51.6 5.47e-6   NR PIO76633.1 45464 g16446 i0 87.5 1.56569343065693 24 3 26.3 0 2 73 44 67 PIO76633.1 ribosomal protein S14p/S29e [Teladorsagia circumcincta] diamond 429 51.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
30294210 30294210 PRJNA1214993_P_NODE_10072_length_345_cov_2.386029_g9886_i0 PRJNA1214993 10072 345 2.386029 8.23180005 Pristionchus fissidentatus 1538716 Nematoda Nematoda 72.8 1.04e-13   NR GMT18625.1 1538716 g9886 i0 38.8 1.00869565217391 116 65 100 3 345 1 2 112 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 348 72.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30502217 30502217 PRJNA1214993_P_NODE_13453_length_301_cov_1.214912_g13267_i0 PRJNA1214993 13453 301 1.214912 3.65688512 Metazoa 33208 Nematoda Nematoda 156 1.73e-45   NR VDN05413.1 103827 g13267 i0 73.7 4.95348837209302 99 26 98.7 0 4 300 101 199 VDN05413.1 unnamed protein product [Thelazia callipaeda] diamond 1491 157 0.993630573248408 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda
30723308 30723308 PRJNA1214993_P_NODE_19754_length_253_cov_0.866667_g19568_i0 PRJNA1214993 19754 253 0.866667 2.19266751 Opisthokonta 33154 Nematoda Nematoda 105 3.1699999999999997e-25   NR XP_002643094.2 6238 g19568 i0 59.3 15.3913043478261 81 33 96 0 250 8 26 106 XP_002643094.2 Protein CBR-RFC-2 [Caenorhabditis briggsae] diamond 3894 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
30767786 30767786 PRJNA1214993_P_NODE_21454_length_250_cov_0.870056_g21268_i0 PRJNA1214993 21454 250 0.870056 2.17514 Trichuris suis 68888 Nematoda Nematoda 47.8 6.56e-4   NR KHJ44091.1 68888 g21268 i0 35.4 0.78 65 37 72 1 30 209 15 79 KHJ44091.1 protein phosphatase 2C [Trichuris suis] diamond 195 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30913113 30913113 PRJNA1214993_P_NODE_15854_length_280_cov_1.507246_g15668_i0 PRJNA1214993 15854 280 1.507246 4.2202888 Metazoa 33208 Nematoda Nematoda 108 7.47e-28   NR CAD5232226.1 6326 g15668 i0 60.7 6.88928571428571 84 33 90 0 254 3 6 89 CAD5232226.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1929 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
31387234 31387234 PRJNA1214993_P_NODE_18176_length_263_cov_1.110526_g17990_i0 PRJNA1214993 18176 263 1.110526 2.92068338 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.2 1.37e-20   NR NP_495811.1 6239 g17990 i0 54.7 2.97718631178707 86 39 98.1 0 263 6 115 200 NP_495811.1 Large ribosomal subunit protein uL18 [Caenorhabditis elegans] diamond 783 93.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31545376 31545376 PRJNA1214993_P_NODE_25316_length_243_cov_0.917647_g25130_i0 PRJNA1214993 25316 243 0.917647 2.22988221 Metazoa 33208 Nematoda Nematoda 62.4 2.7e-9   NR XP_024500476.1 34506 g25130 i0 64.6 1.64197530864198 48 17 59.3 0 1 144 215 262 XP_024500476.1 40S ribosomal protein S4 [Strongyloides ratti] diamond 399 62.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32885133 32885133 PRJNA1214993_P_NODE_17600_length_267_cov_1.340206_g17414_i0 PRJNA1214993 17600 267 1.340206 3.57835002 Aphelenchoides avenae 70226 Nematoda Nematoda 70.5 8.46e-12   NR KAH7729347.1 70226 g17414 i0 47.5 3.29213483146067 80 41 88.8 1 237 1 3 82 KAH7729347.1 mitochondria processing peptidase subunit beta [Aphelenchoides avenae] diamond 879 70.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;