RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA1214993", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 12 ✖

tax_kingdom 1

  • Metazoa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1214993 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6708070 6708070 PRJNA1214993_P_NODE_13386_length_302_cov_1.139738_g13200_i0 PRJNA1214993 13386 302 1.139738 3.44200876 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 167 9.619999999999998e-37   NTclustered gi|1752368967|ref|XM_030988646.1| 7668 g13200 i0 77.228 63.8576158940397 303 57 98 10 6 302 335 631 PREDICTED: Strongylocentrotus purpuratus 60S ribosomal protein L10a (LOC586056), transcript variant X1, mRNA blastn 19285 167 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
9973491 9973491 PRJNA1214993_P_NODE_11328_length_327_cov_1.511811_g11142_i0 PRJNA1214993 11328 327 1.511811 4.94362197 Lytechinus 7652 Echinodermata other_Eukaryota 141 6.38e-29   NTclustered gi|2707407387|ref|XM_054893500.2| 7653 g11142 i0 88.235 3.52293577981651 119 12 36 2 19 136 581 464 PREDICTED: Lytechinus pictus serine/threonine-protein phosphatase 4 catalytic subunit (LOC129254953), mRNA blastn 1152 141 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
19456409 19456409 PRJNA1214993_P_NODE_24376_length_245_cov_0.895349_g24190_i0 PRJNA1214993 24376 245 0.895349 2.19360505 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 453 5.1900000000000006e-123   NTclustered gi|2656634086|gb|PP178709.1| 307972 g24190 i0 100 60.3102040816327 245 0 100 0 1 245 9600 9356 Apostichopus japonicus isolate FJPT mitochondrion, complete genome blastn 14776 453 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
27452101 27452101 PRJNA1214993_P_NODE_23523_length_246_cov_0.901734_g23337_i0 PRJNA1214993 23523 246 0.901734 2.21826564 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 92.4 5.59e-22   NR PIK60842.1 307972 g23337 i0 61.4 7.31707317073171 83 29 97.6 1 1 240 25 107 PIK60842.1 putative ras-related protein [Apostichopus japonicus] diamond 1800 92.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
27597166 27597166 PRJNA1214993_P_NODE_7964_length_384_cov_0.974277_g7778_i0 PRJNA1214993 7964 384 0.974277 3.74122368 Aspidochirotida 7682 Echinodermata other_Eukaryota 130 2.06e-33   NR KAJ8037066.1 206669 g7778 i0 58.1 7 105 44 82 0 384 70 266 370 KAJ8037066.1 putative pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Holothuria leucospilota] diamond 2688 130 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
27881135 27881135 PRJNA1214993_P_NODE_25285_length_243_cov_0.917647_g25099_i0 PRJNA1214993 25285 243 0.917647 2.22988221 Metazoa 33208 Echinodermata other_Eukaryota 103 1.58e-25   NR PIK36082.1 307972 g25099 i0 61.7 4.97530864197531 81 29 100 1 243 1 8 86 PIK36082.1 putative endoplasmic reticulum resident protein 29-like, partial [Apostichopus japonicus] diamond 1209 103 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
28620292 28620292 PRJNA1214993_P_NODE_26407_length_238_cov_2.163636_g26221_i0 PRJNA1214993 26407 238 2.163636 5.14945368 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 75.1 6.98e-15   NR XP_001178621.1 7668 g26221 i0 52.2 0.84453781512605 67 32 84.5 0 4 204 57 123 XP_001178621.1 prefoldin subunit 5 [Strongylocentrotus purpuratus] diamond 201 75.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
29188681 29188681 PRJNA1214993_P_NODE_26289_length_242_cov_0.911243_g26103_i0 PRJNA1214993 26289 242 0.911243 2.20520806 Asterias rubens 7604 Echinodermata other_Eukaryota 110 4.23e-27   NR XP_033637698.1 7604 g26103 i0 64.5 5.52892561983471 76 27 94.2 0 13 240 1 76 XP_033637698.1 LOW QUALITY PROTEIN: dehydrogenase/reductase SDR family member 12-like [Asterias rubens] diamond 1338 110 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
31146500 31146500 PRJNA1214993_P_NODE_5355_length_462_cov_2.771208_g5170_i0 PRJNA1214993 5355 462 2.771208 12.80298096 Asterias rubens 7604 Echinodermata other_Eukaryota 44.7 0.0306   NR XP_033625053.1 7604 g5170 i0 33.3 0.928571428571429 75 42 44.8 2 66 272 84 156 XP_033625053.1 antistasin-like [Asterias rubens] diamond 429 44.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
32095751 32095751 PRJNA1214993_P_NODE_16638_length_274_cov_1.552239_g16452_i0 PRJNA1214993 16638 274 1.552239 4.25313486 Asterias rubens 7604 Echinodermata other_Eukaryota 61.6 7.22e-9   NR XP_033640070.1 7604 g16452 i0 48.1 0.843065693430657 77 34 84.3 1 241 11 3 73 XP_033640070.1 enkurin-like [Asterias rubens] diamond 231 61.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
32254341 32254341 PRJNA1214993_P_NODE_11378_length_326_cov_2.019763_g11192_i0 PRJNA1214993 11378 326 2.019763 6.58442738 Anneissia japonica 1529436 Echinodermata other_Eukaryota 62 4.11e-9   NR XP_033108205.1 1529436 g11192 i0 38.5 1.6840490797546 96 55 88.3 2 12 299 1 92 XP_033108205.1 translocon-associated protein subunit beta-like [Anneissia japonica] diamond 549 62 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
32885150 32885150 PRJNA1214993_P_NODE_6080_length_435_cov_1.624309_g5895_i0 PRJNA1214993 6080 435 1.624309 7.06574415 Paelopatides sp. YL-2 2219783 Echinodermata other_Eukaryota 180 3.3799999999999985e-55   NR AWT62728.1 2219783 g5895 i0 65.2 9.43448275862069 135 46 93.1 1 407 3 5 138 AWT62728.1 copper-zinc superoxide dismutase [Paelopatides sp. YL-2018] diamond 4104 180 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Synallactidae Paelopatides Paelopatides sp. YL-2018

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;