RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1214993", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1214993 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13084002 13084002 PRJNA1214993_P_NODE_20751_length_251_cov_0.865169_g20565_i0 PRJNA1214993 20751 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 139 2.4299999999999997e-37   NR MFH1453142.1 2033014 g20565 i0 77.1 4.9601593625498 83 19 99.2 0 3 251 256 338 MFH1453142.1 argininosuccinate synthase [Armatimonadota bacterium] diamond 1245 140 0.992857142857143 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29693307 29693307 PRJNA1214993_P_NODE_9030_length_363_cov_1.075862_g8844_i0 PRJNA1214993 9030 363 1.075862 3.90537906 Chthonomonadales bacterium 2282151 Bacteria Bacteria 55.1 4.26e-6   NR MCW3055961.1 2282151 g8844 i0 56 0.859504132231405 50 21 40.5 1 363 217 186 235 MCW3055961.1 gluconolactonase [Chthonomonadales bacterium] diamond 312 55.1 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
32746622 32746622 PRJNA1214993_P_NODE_17220_length_270_cov_1.253807_g17034_i0 PRJNA1214993 17220 270 1.253807 3.3852789 PVC group 1783257 Bacteria Bacteria 113 1.96e-27   NR MDH4389360.1 1936159 g17034 i0 62.9 5.93333333333333 89 33 98.9 0 269 3 220 308 MDH4389360.1 threonine ammonia-lyase [Fimbriimonas sp.] diamond 1602 113 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;