RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1214993", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1214993 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
330319 330319 PRJNA1214993_P_NODE_25381_length_243_cov_0.917647_g25195_i0 PRJNA1214993 25381 243 0.917647 2.22988221 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 137 2.59e-35   NR ETO26767.1 46433 g25195 i0 76.3 15.7777777777778 80 19 98.8 0 2 241 740 819 ETO26767.1 ribonucleoside-diphosphate reductase large chain [Reticulomyxa filosa] diamond 3834 137 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28399114 28399114 PRJNA1214993_P_NODE_24606_length_244_cov_1.415205_g24420_i0 PRJNA1214993 24606 244 1.415205 3.4531002 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 74.3 1.3e-13   NR ETO15747.1 46433 g24420 i0 59 0.75 61 25 75 0 55 237 222 282 ETO15747.1 heterogeneous nuclear ribonucleoprotein H [Reticulomyxa filosa] diamond 183 74.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;