RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1214993", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 6 ✖

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA1214993 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6708062 6708062 PRJNA1214993_P_NODE_12786_length_309_cov_0.877119_g12600_i0 PRJNA1214993 12786 309 0.877119 2.71029771 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.029   NTclustered gi|2806474035|ref|XM_068494155.1| 1144522 g12600 i0 100 0.0906148867313916 28 0 9 0 99 126 684 711 Tritrichomonas foetus uncharacterized protein (TRFO_08210), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
19456397 19456397 PRJNA1214993_P_NODE_22836_length_247_cov_1.172414_g22650_i0 PRJNA1214993 22836 247 1.172414 2.89586258 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2806448246|ref|XM_068499511.1| 1144522 g22650 i0 96.97 0.246963562753036 33 0 13 1 195 227 8793 8762 Tritrichomonas foetus Dynein heavy chain family protein (TRFO_17307), partial mRNA blastn 61 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28241027 28241027 PRJNA1214993_P_NODE_13626_length_299_cov_1.345133_g13440_i0 PRJNA1214993 13626 299 1.345133 4.02194767 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 58.2 2.68e-7   NR XP_067776363.1 135588 g13440 i0 40.7 1.7257525083612 81 44 80.3 2 57 296 262 339 XP_067776363.1 LMBR1-like conserved region family protein [Histomonas meleagridis] diamond 516 58.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30452050 30452050 PRJNA1214993_P_NODE_26313_length_241_cov_2.755952_g26127_i0 PRJNA1214993 26313 241 2.755952 6.64184432 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.1 0.00327   NR XP_001315081.1 412133 g26127 i0 36.9 0.809128630705394 65 41 80.9 0 2 196 24 88 XP_001315081.1 calcium ion binding [Trichomonas vaginalis G3] diamond 195 45.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30565056 30565056 PRJNA1214993_P_NODE_20493_length_251_cov_0.876404_g20307_i0 PRJNA1214993 20493 251 0.876404 2.19977404 root 1 Root_unresolved Root_unresolved 61.2 8.7e-9   NR BAM14413.1 5735 g20307 i0 45 8.64143426294821 80 36 95.6 2 251 12 154 225 BAM14413.1 elongation factor-1 alpha, partial [Hypotrichomonas acosta] diamond 2169 61.6 0.993506493506494 Eukaryota Metamonada   Parabasalia   Hypotrichomonadida Hypotrichomonadidae Hypotrichomonas Hypotrichomonas acosta
31241595 31241595 PRJNA1214993_P_NODE_23115_length_247_cov_0.896552_g22929_i0 PRJNA1214993 23115 247 0.896552 2.21448344 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 58.2 1.4e-7   NR XP_067770980.1 135588 g22929 i0 47.7 3.8502024291498 65 32 77.7 2 244 53 154 217 XP_067770980.1 CAMK family protein kinase [Histomonas meleagridis] diamond 951 58.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;