RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1214993", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1214993 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11808980 11808980 PRJNA1214993_P_NODE_23350_length_246_cov_1.803468_g23164_i0 PRJNA1214993 23350 246 1.803468 4.43653128 Heleopera baetica 2844938 Tubulinea other_Eukaryota 102 2.18e-17   NTclustered gi|2050647004|gb|MZ366437.1| 2844938 g23164 i0 88.372 29.1056910569106 86 8 35 2 82 166 209 293 Heleopera baetica isolate A1 small subunit ribosomal RNA gene, partial sequence blastn 7160 102 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera baetica
24556362 24556362 PRJNA1214993_P_NODE_10100_length_345_cov_1.415441_g9914_i0 PRJNA1214993 10100 345 1.415441 4.88327145 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 158 8.4e-46   NR AAY21191.1 5778 g9914 i0 72.8 2 114 30 99.1 1 3 344 43 155 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 690 158 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27862245 27862245 PRJNA1214993_P_NODE_22385_length_248_cov_0.891429_g22199_i0 PRJNA1214993 22385 248 0.891429 2.21074392 Copromyxa protea 931554 Tubulinea other_Eukaryota 112 5.5100000000000005e-27   NR BAN33737.1 931554 g22199 i0 86.2 0.786290322580645 65 9 78.6 0 2 196 402 466 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 195 112 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
28304359 28304359 PRJNA1214993_P_NODE_26006_length_242_cov_0.923077_g25820_i0 PRJNA1214993 26006 242 0.923077 2.23384634 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 144 2.43e-40   NR ABD46596.1 5778 g25820 i0 86.3 0.991735537190083 80 11 99.2 0 240 1 190 269 ABD46596.1 unknown, partial [Vermamoeba vermiformis] diamond 240 144 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;