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contig_metadata

22 rows where bioproject = "PRJNA1204310" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA1204310 · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2320354 2320354 PRJNA1204310_P_NODE_36682_length_308_cov_0.995745_g36385_i0 PRJNA1204310 36682 308 0.995745 3.0668946 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 564 2.99e-156   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g36385 i0 99.675 49.2402597402597 308 1 100 0 1 308 575 268 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 15166 569 0.991212653778559 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
4156355 4156355 PRJNA1204310_P_NODE_43324_length_281_cov_4.538462_g43027_i0 PRJNA1204310 43324 281 4.538462 12.75307822 Glaeseria mira 242547 Tubulinea other_Eukaryota 335 2.3e-87   NTclustered gi|33946352|gb|AY294155.1| 242547 g43027 i0 88.489 91.1138790035587 278 31 99 1 1 277 296 19 Glaeseria mira actin mRNA, partial cds blastn 25603 335 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
4156774 4156774 PRJNA1204310_P_NODE_644_length_1623_cov_62.105806_g562_i0 PRJNA1204310 644 1623 62.105806 1007.97723138 Copromyxa protea 931554 Tubulinea other_Eukaryota 769 2.9100000000000003e-276   NR BAN33737.1 931554 g562 i0 81.2 2.54343807763401 463 81 84.5 1 39 1409 1 463 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 4128 769 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
5431756 5431756 PRJNA1204310_P_NODE_1005_length_1408_cov_3.402996_g886_i0 PRJNA1204310 1005 1408 3.402996 47.91418368 Copromyxa protea 931554 Tubulinea other_Eukaryota 1557 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g886 i0 87.15 27.1732954545455 1393 153 97 16 14 1384 1 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38260 1557 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
5432241 5432241 PRJNA1204310_P_NODE_29085_length_344_cov_2.140221_g28788_i0 PRJNA1204310 29085 344 2.140221 7.36236024 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 636 7.059999999999998e-178   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g28788 i0 100 83.1482558139535 344 0 100 0 1 344 1083 740 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 28603 636 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
6707350 6707350 PRJNA1204310_P_NODE_51246_length_253_cov_0.866667_g50949_i0 PRJNA1204310 51246 253 0.866667 2.19266751 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 468 1.92e-127   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g50949 i0 100 26.6837944664032 253 0 100 0 1 253 1655 1403 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 6751 468 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
9256823 9256823 PRJNA1204310_P_NODE_21628_length_391_cov_1.116352_g21331_i0 PRJNA1204310 21628 391 1.116352 4.36493632 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 640 6.27e-179   NTclustered gi|1042160931|dbj|LC102272.1| 1789826 g21331 i0 96.164 99.3222506393862 391 15 100 0 1 391 57 447 Copromyxa sp. MK-2016 gene for actin, partial cds, strain: ZEB1_cl1 blastn 38835 640 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
11807400 11807400 PRJNA1204310_P_NODE_19230_length_411_cov_1.153846_g18933_i0 PRJNA1204310 19230 411 1.153846 4.74230706 Amoeba proteus 5775 Tubulinea other_Eukaryota 229 9.18e-72   NR AAP88974.1 5775 g18933 i0 81.6 0.992700729927007 136 25 99.3 0 410 3 131 266 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 408 229 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
11807610 11807610 PRJNA1204310_P_NODE_27890_length_351_cov_0.888489_g27593_i0 PRJNA1204310 27890 351 0.888489 3.11859639 Amoeba proteus 5775 Tubulinea other_Eukaryota 201 4.24e-62   NR AFX84537.1 5775 g27593 i0 82.1 1 117 21 100 0 351 1 106 222 AFX84537.1 alpha tubulin, partial [Amoeba proteus] diamond 351 201 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
12523606 12523606 PRJNA1204310_P_NODE_14070_length_472_cov_6.263158_g13773_i0 PRJNA1204310 14070 472 6.263158 29.56210576 Saccamoeba 136463 Tubulinea other_Eukaryota 872 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g13773 i0 100 95.2733050847458 472 0 100 0 1 472 1652 1181 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 44969 872 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
13083065 13083065 PRJNA1204310_P_NODE_45951_length_272_cov_1.175879_g45654_i0 PRJNA1204310 45951 272 1.175879 3.19839088 Amoeba proteus 5775 Tubulinea other_Eukaryota 160 6.08e-48   NR AAW58116.1 5775 g45654 i0 81.1 0.992647058823529 90 17 99.3 0 272 3 59 148 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 270 160 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
15631713 15631713 PRJNA1204310_P_NODE_2113_length_1080_cov_2.420060_g1925_i0 PRJNA1204310 2113 1080 2.42006 26.136648 Amoeba proteus 5775 Tubulinea other_Eukaryota 563 1.74e-199   NR AAP88974.1 5775 g1925 i0 79.2 0.961111111111111 346 70 96.1 1 1080 43 47 390 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 1038 563 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
18180207 18180207 PRJNA1204310_P_NODE_11855_length_511_cov_1.958904_g11558_i0 PRJNA1204310 11855 511 1.958904 10.00999944 Copromyxa protea 931554 Tubulinea other_Eukaryota 364 5.6599999999999985e-96   NTclustered gi|508737347|dbj|AB766053.1| 931554 g11558 i0 80.04 1.09784735812133 496 95 97 4 1 494 494 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 561 364 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
22005515 22005515 PRJNA1204310_P_NODE_1578_length_1212_cov_12.890255_g1415_i0 PRJNA1204310 1578 1212 12.890255 156.2298906 Amoeba proteus 5775 Tubulinea other_Eukaryota 619 1.61e-220   NR AAP88974.1 5775 g1415 i0 77.6 0.97029702970297 392 85 96.8 2 1204 32 1 390 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 1176 619 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
22006303 22006303 PRJNA1204310_P_NODE_50918_length_253_cov_0.866667_g50621_i0 PRJNA1204310 50918 253 0.866667 2.19266751 Chaos carolinense 160823 Tubulinea other_Eukaryota 142 2.2199999999999996e-41   NR AFX73058.1 160823 g50621 i0 85.7 0.99604743083004 84 12 99.6 0 2 253 69 152 AFX73058.1 14-3-3 protein, partial [Chaos carolinense] diamond 252 142 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
23281961 23281961 PRJNA1204310_P_NODE_7699_length_624_cov_2.573503_g7413_i0 PRJNA1204310 7699 624 2.573503 16.05865872 Amoeba proteus 5775 Tubulinea other_Eukaryota 342 4.38e-116   NR AFX84537.1 5775 g7413 i0 80.7 0.995192307692308 207 40 99.5 0 623 3 47 253 AFX84537.1 alpha tubulin, partial [Amoeba proteus] diamond 621 342 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28209427 28209427 PRJNA1204310_P_NODE_2866_length_955_cov_1.833333_g2648_i0 PRJNA1204310 2866 955 1.833333 17.50833015 Copromyxa protea 931554 Tubulinea other_Eukaryota 498 4.17e-173   NR BAN33737.1 931554 g2648 i0 74 1.01465968586387 323 79 99.9 1 954 1 130 452 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 969 498 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
28999328 28999328 PRJNA1204310_P_NODE_52188_length_252_cov_0.871508_g51891_i0 PRJNA1204310 52188 252 0.871508 2.19620016 Amoeba proteus 5775 Tubulinea other_Eukaryota 119 4.75e-29   NR AKN09691.1 5775 g51891 i0 67.5 0.988095238095238 83 27 98.8 0 2 250 694 776 AKN09691.1 Tom70 [Amoeba proteus] diamond 249 119 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30262455 30262455 PRJNA1204310_P_NODE_45872_length_272_cov_1.537688_g45575_i0 PRJNA1204310 45872 272 1.537688 4.18251136 Amoeba proteus 5775 Tubulinea other_Eukaryota 97.1 4.34e-22   NR AKN09689.1 5775 g45575 i0 58.8 0.9375 85 32 91.5 3 15 263 95 178 AKN09689.1 Tom20 [Amoeba proteus] diamond 255 97.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31336422 31336422 PRJNA1204310_P_NODE_42836_length_283_cov_1.485714_g42539_i0 PRJNA1204310 42836 283 1.485714 4.20457062 Amoeba proteus 5775 Tubulinea other_Eukaryota 145 3.5999999999999995e-38   NR AKN09691.1 5775 g42539 i0 69.1 0.996466431095406 94 29 99.6 0 282 1 588 681 AKN09691.1 Tom70 [Amoeba proteus] diamond 282 145 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32064047 32064047 PRJNA1204310_P_NODE_7998_length_613_cov_2.655556_g7712_i0 PRJNA1204310 7998 613 2.655556 16.27855828 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 147 6.21e-40   NR AAY87037.1 5778 g7712 i0 44.5 0.978792822185971 200 102 94.9 5 583 2 37 233 AAY87037.1 CmfA-like protein, partial [Vermamoeba vermiformis] diamond 600 147 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32809499 32809499 PRJNA1204310_P_NODE_41460_length_288_cov_1.204651_g41163_i0 PRJNA1204310 41460 288 1.204651 3.46939488 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.2 4.2e-9   NR AKN09691.1 5775 g41163 i0 41.5 1.77083333333333 82 48 85.4 0 269 24 37 118 AKN09691.1 Tom70 [Amoeba proteus] diamond 510 63.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;