RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1204310", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 7 ✖

tax_phylum 1

  • Kitrinoviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1204310 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2879795 2879795 PRJNA1204310_P_NODE_23103_length_380_cov_1.524430_g22806_i0 PRJNA1204310 23103 380 1.52443 5.792834 Prunevirus actinidiae 3241185 Viruses Viruses 697 0   NTclustered gi|1571847414|ref|NC_040800.1| 2560282 g22806 i0 99.737 3 380 1 100 0 1 380 2671 2292 Actinidia seed-borne latent virus isolate 01227, complete genome blastn 1140 697 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae
2880373 2880373 PRJNA1204310_P_NODE_4783_length_772_cov_1.988555_g4526_i0 PRJNA1204310 4783 772 1.988555 15.3516446 Prunevirus actinidiae 3241185 Viruses Viruses 1404 0   NTclustered gi|1571847414|ref|NC_040800.1| 2560282 g4526 i0 99.482 16.4779792746114 772 4 100 0 1 772 7749 6978 Actinidia seed-borne latent virus isolate 01227, complete genome blastn 12721 1404 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae
4155903 4155903 PRJNA1204310_P_NODE_23544_length_377_cov_1.279605_g23247_i0 PRJNA1204310 23544 377 1.279605 4.82411085 Prunevirus actinidiae 3241185 Viruses Viruses 691 0   NTclustered gi|1571847414|ref|NC_040800.1| 2560282 g23247 i0 99.735 3 377 1 100 0 1 377 2128 1752 Actinidia seed-borne latent virus isolate 01227, complete genome blastn 1131 691 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae
6707212 6707212 PRJNA1204310_P_NODE_45166_length_275_cov_1.158416_g44869_i0 PRJNA1204310 45166 275 1.158416 3.185644 Prunevirus actinidiae 3241185 Viruses Viruses 508 1.2499999999999999e-139   NTclustered gi|1571847414|ref|NC_040800.1| 2560282 g44869 i0 100 4.93090909090909 275 0 100 0 1 275 426 700 Actinidia seed-borne latent virus isolate 01227, complete genome blastn 1356 508 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae
10533338 10533338 PRJNA1204310_P_NODE_49029_length_259_cov_1.876344_g48732_i0 PRJNA1204310 49029 259 1.876344 4.85973096 Prunevirus actinidiae 3241185 Viruses Viruses 479 9.13e-131   NTclustered gi|1534861450|dbj|LC438404.1| 2560282 g48732 i0 100 3 259 0 100 0 1 259 6818 6560 Actinidia seed borne latent virus JN-BS4 RNA, complete genome blastn 777 479 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae
15632706 15632706 PRJNA1204310_P_NODE_8273_length_604_cov_1.011299_g7987_i0 PRJNA1204310 8273 604 1.011299 6.10824596 Prunevirus actinidiae 3241185 Viruses Viruses 1072 0   NTclustered gi|1534861450|dbj|LC438404.1| 2560282 g7987 i0 98.675 3 604 8 100 0 1 604 3696 4299 Actinidia seed borne latent virus JN-BS4 RNA, complete genome blastn 1812 1072 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae
16905946 16905946 PRJNA1204310_P_NODE_19694_length_407_cov_1.398204_g19397_i0 PRJNA1204310 19694 407 1.398204 5.69069028 Prunevirus actinidiae 3241185 Viruses Viruses 752 0   NTclustered gi|1571847414|ref|NC_040800.1| 2560282 g19397 i0 100 3 407 0 100 0 1 407 5166 4760 Actinidia seed-borne latent virus isolate 01227, complete genome blastn 1221 752 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Prunevirus Prunevirus actinidiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;