RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1204310", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA1204310 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26679813 26679813 PRJNA1204310_P_NODE_52381_length_252_cov_0.871508_g52084_i0 PRJNA1204310 52381 252 0.871508 2.19620016 Chloroflexota 200795 Bacteria Bacteria 73.2 7.89e-13   NR PKN54085.1 2013741 g52084 i0 39.8 11.9880952380952 83 49 98.8 1 2 250 390 471 PKN54085.1 MAG: 6-phosphofructokinase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 3021 73.6 0.994565217391304 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
28544407 28544407 PRJNA1204310_P_NODE_48827_length_260_cov_1.534759_g48530_i0 PRJNA1204310 48827 260 1.534759 3.9903734 Pseudomonadota 1224 Bacteria Bacteria 47.8 6.02e-4   NR KPJ56364.1 1703397 g48530 i0 39 4.95 59 31 68.1 2 185 9 155 208 KPJ56364.1 MAG: hypothetical protein AMJ42_05405 [Deltaproteobacteria bacterium DG_8] diamond 1287 47.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium DG_8
28670615 28670615 PRJNA1204310_P_NODE_55527_length_249_cov_0.886364_g55230_i0 PRJNA1204310 55527 249 0.886364 2.20704636 root 1 Root_unresolved Root_unresolved 127 3.08e-33   NR EFK08012.1 88274 g55230 i0 72.3 3.01204819277108 83 22 100 1 249 1 81 162 EFK08012.1 CoA-transferase family III protein [delta proteobacterium NaphS2] diamond 750 127 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium NaphS2
32431130 32431130 PRJNA1204310_P_NODE_49779_length_256_cov_1.672131_g49482_i0 PRJNA1204310 49779 256 1.672131 4.28065536 Myxococcota 2818505 Bacteria Bacteria 108 6.21e-29   NR MCH7479231.1 2024889 g49482 i0 76.8 4.83984375 69 16 80.9 0 28 234 2 70 MCH7479231.1 50S ribosomal protein L27 [SAR324 cluster bacterium] diamond 1239 108 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;