RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1204310", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1204310 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27167255 27167255 PRJNA1204310_P_NODE_27202_length_354_cov_1.950178_g26905_i0 PRJNA1204310 27202 354 1.950178 6.90363012 Lentisphaerota bacterium 1932692 Bacteria Bacteria 73.9 1.42e-12   NR MCP3965836.1 1932692 g26905 i0 33 0.974576271186441 115 73 94.1 1 339 7 191 305 MCP3965836.1 winged helix-turn-helix domain-containing protein [Lentisphaerota bacterium] diamond 345 73.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29188595 29188595 PRJNA1204310_P_NODE_16509_length_440_cov_1.062670_g16212_i0 PRJNA1204310 16509 440 1.06267 4.675748 Victivallaceae bacterium 2793042 Bacteria Bacteria 57.8 1.61e-6   NR MDD4816529.1 2793042 g16212 i0 33.3 0.879545454545455 129 76 85.2 3 6 380 20 142 MDD4816529.1 protein kinase [Victivallaceae bacterium] diamond 387 57.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
30660167 30660167 PRJNA1204310_P_NODE_27713_length_352_cov_0.838710_g27416_i0 PRJNA1204310 27713 352 0.83871 2.9522592 Bacteria 2 Bacteria Bacteria 93.2 2.6e-20   NR OGV44912.1 1798571 g27416 i0 40.5 5.91477272727273 116 63 97.2 2 3 344 127 238 OGV44912.1 MAG: hypothetical protein A2017_21135 [Lentisphaerae bacterium GWF2_44_16] diamond 2082 94 0.991489361702128 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_44_16
30862462 30862462 PRJNA1204310_P_NODE_40194_length_292_cov_1.397260_g39897_i0 PRJNA1204310 40194 292 1.39726 4.0799992 Victivallales bacterium 2212475 Bacteria Bacteria 46.6 0.00277   NR MBO7742176.1 2212475 g39897 i0 50 0.349315068493151 34 17 34.9 0 284 183 106 139 MBO7742176.1 sel1 repeat family protein [Victivallales bacterium] diamond 102 46.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;