RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1204310", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 9 ✖

tax_clade 1

  • Metamonada · 9 ✖

bioproject 1

  • PRJNA1204310 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1604222 1604222 PRJNA1204310_P_NODE_47382_length_266_cov_1.528497_g47085_i0 PRJNA1204310 47382 266 1.528497 4.06580202 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.5 7.95e-19   NR XP_067770707.1 135588 g47085 i0 58.1 11.7293233082707 74 31 83.5 0 222 1 771 844 XP_067770707.1 Ubiquitin-like modifier-activating enzyme 1 [Histomonas meleagridis] diamond 3120 90.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
7983106 7983106 PRJNA1204310_P_NODE_55947_length_248_cov_1.308571_g55650_i0 PRJNA1204310 55947 248 1.308571 3.24525608 root 1 Root_unresolved Root_unresolved 85.9 2.29e-17   NR XP_068364201.1 1144522 g55650 i0 58.5 10.0403225806452 82 30 99.2 2 2 247 36 113 XP_068364201.1 Fumarate hydratase class II [Tritrichomonas foetus] diamond 2490 85.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27167258 27167258 PRJNA1204310_P_NODE_29942_length_340_cov_1.168539_g29645_i0 PRJNA1204310 29942 340 1.168539 3.9730326 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 67 5.41e-11   NR XP_001310894.1 412133 g29645 i0 34.2 1.05882352941176 120 70 97.9 2 8 340 30 149 XP_001310894.1 calcium ion binding [Trichomonas vaginalis G3] diamond 360 67 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28967508 28967508 PRJNA1204310_P_NODE_15748_length_449_cov_1.513298_g15451_i0 PRJNA1204310 15748 449 1.513298 6.79470802 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 49.3 0.00179   NR XP_068361727.1 1144522 g15451 i0 39 0.66815144766147 100 44 63.5 4 446 162 3115 3202 XP_068361727.1 uncharacterized protein TRFO_22858 [Tritrichomonas foetus] diamond 300 49.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29030749 29030749 PRJNA1204310_P_NODE_47328_length_266_cov_1.994819_g47031_i0 PRJNA1204310 47328 266 1.994819 5.30621854 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 52.4 3.36e-6   NR XP_001328819.1 412133 g47031 i0 37.5 2.44736842105263 56 35 63.2 0 253 86 4 59 XP_001328819.1 hypothetical protein TVAGG3_0376390 [Trichomonas vaginalis G3] diamond 651 52.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30704467 30704467 PRJNA1204310_P_NODE_62274_length_242_cov_0.923077_g61977_i0 PRJNA1204310 62274 242 0.923077 2.23384634 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 84.7 6.1e-17   NR XP_068362277.1 1144522 g61977 i0 58.3 2.56611570247934 72 30 89.3 0 216 1 2 73 XP_068362277.1 Elongation factor 2 [Tritrichomonas foetus] diamond 621 84.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31115027 31115027 PRJNA1204310_P_NODE_62355_length_242_cov_0.923077_g62058_i0 PRJNA1204310 62355 242 0.923077 2.23384634 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 55.1 1.64e-6   NR XP_068369788.1 1144522 g62058 i0 34.1 1.01652892561983 82 49 96.7 2 242 9 25 105 XP_068369788.1 uncharacterized protein TRFO_13084 [Tritrichomonas foetus] diamond 246 55.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32349127 32349127 PRJNA1204310_P_NODE_36139_length_310_cov_1.362869_g35842_i0 PRJNA1204310 36139 310 1.362869 4.2248939 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 46.2 0.00458   NR XP_001317671.1 412133 g35842 i0 35.9 0.754838709677419 78 49 74.5 1 48 278 14 91 XP_001317671.1 positive regulation of non-motile cilium assembly [Trichomonas vaginalis G3] diamond 234 46.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32570651 32570651 PRJNA1204310_P_NODE_55239_length_249_cov_0.886364_g54942_i0 PRJNA1204310 55239 249 0.886364 2.20704636 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.4 7.91e-6   NR ABA39444.1 5722 g54942 i0 43.6 0.939759036144578 78 40 92.8 3 248 18 102 176 ABA39444.1 RasC [Trichomonas vaginalis] diamond 234 52.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;