RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1204310", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1204310 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31083703 31083703 PRJNA1204310_P_NODE_55415_length_249_cov_0.886364_g55118_i0 PRJNA1204310 55415 249 0.886364 2.20704636 Rhodothermales bacterium 2306054 Bacteria Bacteria 65.1 4.97e-10   NR MFK7848925.1 2306054 g55118 i0 39.5 3.7710843373494 81 42 97.6 3 245 3 151 224 MFK7848925.1 M43 family zinc metalloprotease [Rhodothermales bacterium] diamond 939 65.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
32903893 32903893 PRJNA1204310_P_NODE_17920_length_424_cov_0.886040_g17623_i0 PRJNA1204310 17920 424 0.88604 3.7568096 Pseudomonadati 3379134 Bacteria Bacteria 136 7.299999999999999e-36   NR WP_251942085.1 146919 g17623 i0 49.6 3.61556603773585 127 64 89.9 0 382 2 84 210 WP_251942085.1 Fic family protein [Salinibacter ruber] diamond 1533 137 0.992700729927007 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;