RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1200128" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1200128 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10530992 10530992 PRJNA1200128_S_NODE_7089_length_282_cov_0.983264_g6980_i0 PRJNA1200128 7089 282 0.983264 2.77280448 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 468 2.18e-127   NTclustered gi|76574295|gb|DQ139443.1| 171953 g6980 i0 96.479 107.460992907801 284 8 100 2 1 282 596 879 Uncultured Acidobacteria bacterium clone CAL2 23S ribosomal RNA gene, partial sequence blastn 30304 468 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
27293824 27293824 PRJNA1200128_S_NODE_16683_length_215_cov_1.651163_g16574_i0 PRJNA1200128 16683 215 1.651163 3.55000045 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 42.4 0.026   NR HEY0169517.1 2283092 g16574 i0 35.3 0.948837209302326 68 41 90.7 1 20 214 27 94 HEY0169517.1 DUF2085 domain-containing protein [Pyrinomonadaceae bacterium] diamond 204 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29377831 29377831 PRJNA1200128_S_NODE_19989_length_204_cov_1.142857_g19880_i0 PRJNA1200128 19989 204 1.142857 2.33142828 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 43.5 0.0121   NR HSE32976.1 2283092 g19880 i0 40 0.808823529411765 55 23 80.9 1 179 15 1033 1077 HSE32976.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 165 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29661538 29661538 PRJNA1200128_S_NODE_45950_length_154_cov_1.639640_g45841_i0 PRJNA1200128 45950 154 1.63964 2.5250456 Terracidiphilus sp. 1964191 Bacteria Bacteria 41.6 0.0293   NR MDR3772683.1 1964191 g45841 i0 40.5 2.45454545454545 42 25 81.8 0 138 13 670 711 MDR3772683.1 FG-GAP-like repeat-containing protein [Terracidiphilus sp.] diamond 378 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
30262415 30262415 PRJNA1200128_S_NODE_37972_length_165_cov_1.073770_g37863_i0 PRJNA1200128 37972 165 1.07377 1.7717205 Acidobacteriota bacterium 1978231 Bacteria Bacteria 41.6 0.0332   NR MCA1816235.1 1978231 g37863 i0 48.3 0.527272727272727 29 15 52.7 0 70 156 114 142 MCA1816235.1 3-oxoacyl-ACP reductase FabG [Acidobacteriota bacterium] diamond 87 41.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31652627 31652627 PRJNA1200128_S_NODE_20897_length_201_cov_1.487342_g20788_i0 PRJNA1200128 20897 201 1.487342 2.98955742 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42 0.0408   NR MCZ6670803.1 1978231 g20788 i0 60.7 0.417910447761194 28 11 41.8 0 40 123 245 272 MCZ6670803.1 helix-turn-helix transcriptional regulator [Acidobacteriota bacterium] diamond 84 42 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32127566 32127566 PRJNA1200128_S_NODE_12878_length_233_cov_1.978947_g12769_i0 PRJNA1200128 12878 233 1.978947 4.61094651 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42.4 0.0437   NR MBV9494258.1 1978231 g12769 i0 38.3 0.772532188841202 60 37 77.3 0 219 40 24 83 MBV9494258.1 O-antigen ligase family protein [Acidobacteriota bacterium] diamond 180 42.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32159175 32159175 PRJNA1200128_S_NODE_32258_length_174_cov_2.938931_g32149_i0 PRJNA1200128 32258 174 2.938931 5.11373994 Acidobacteriota bacterium 1978231 Bacteria Bacteria 40.8 0.0313   NR MAW62365.1 1978231 g32149 i0 37.5 0.827586206896552 48 29 82.8 1 8 151 67 113 MAW62365.1 hypothetical protein [Acidobacteriota bacterium] diamond 144 40.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;