RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1200128", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJNA1200128 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1044735 1044735 PRJNA1200128_S_NODE_11461_length_242_cov_1.497487_g11352_i0 PRJNA1200128 11461 242 1.497487 3.62391854 Sorangium 39643 Bacteria Bacteria 259 1.2e-64   NTclustered gi|507148211|ref|NR_103018.1| 56 g11352 i0 86.122 85.400826446281 245 28 100 5 1 242 47 288 Sorangium cellulosum strain So ce 56 23S ribosomal RNA gene, complete sequence blastn 20667 259 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
6704945 6704945 PRJNA1200128_S_NODE_9606_length_256_cov_1.535211_g9497_i0 PRJNA1200128 9606 256 1.535211 3.93014016 Sorangium cellulosum 56 Bacteria Bacteria 274 4.5599999999999997e-69   NTclustered gi|1338588479|gb|CP012673.1| 56 g9497 i0 92.347 105.60546875 196 9 75 5 65 256 3449227 3449420 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 27035 274 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
24553157 24553157 PRJNA1200128_S_NODE_26840_length_185_cov_2.718310_g26731_i0 PRJNA1200128 26840 185 2.71831 5.0288735 Pendulispora albinea 2741071 Bacteria Bacteria 52.8 0.016   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g26731 i0 100 0.151351351351351 28 0 15 0 108 135 6904058 6904085 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
28746329 28746329 PRJNA1200128_S_NODE_3467_length_363_cov_2.071875_g3358_i0 PRJNA1200128 3467 363 2.071875 7.52090625 Myxococcota bacterium 2818507 Bacteria Bacteria 121 4.53e-29   NR MEL6195521.1 2818507 g3358 i0 43.8 1 121 68 100 0 1 363 405 525 MEL6195521.1 hypothetical protein [Myxococcota bacterium] diamond 363 121 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28999286 28999286 PRJNA1200128_S_NODE_26188_length_187_cov_1.305556_g26079_i0 PRJNA1200128 26188 187 1.305556 2.44138972 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42 0.0335   NR MBW1892295.1 2026735 g26079 i0 46.9 0.513368983957219 32 17 51.3 0 92 187 296 327 MBW1892295.1 HD domain-containing protein [Deltaproteobacteria bacterium] diamond 96 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;