RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1200128", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1200128 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13798074 13798074 PRJNA1200128_S_NODE_22291_length_197_cov_1.740260_g22182_i0 PRJNA1200128 22291 197 1.74026 3.4283122 Peredibacter 263370 Bacteria Bacteria 353 4.18e-93   NTclustered gi|2631252187|gb|CP139487.1| 28202 g22182 i0 98.985 277.822335025381 197 2 100 0 1 197 511313 511509 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 54731 353 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
16904192 16904192 PRJNA1200128_S_NODE_32554_length_174_cov_1.076336_g32445_i0 PRJNA1200128 32554 174 1.076336 1.87282464 Fluviispira sanaruensis 2493639 Bacteria Bacteria 52.8 0.015   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g32445 i0 100 0.160919540229885 28 0 16 0 89 116 2851056 2851083 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;