RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1200128" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1200128 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9255021 9255021 PRJNA1200128_S_NODE_2528_length_416_cov_2.300268_g2419_i0 PRJNA1200128 2528 416 2.300268 9.56911488 Leptotrichia shahii 157691 Bacteria Bacteria 758 0   NTclustered gi|1708568515|dbj|AP019827.1| 157691 g2419 i0 99.519 144.362980769231 416 2 100 0 1 416 94201 94616 Leptotrichia shahii JCM16776 DNA, complete genome blastn 60055 758 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia shahii
11247985 11247985 PRJNA1200128_S_NODE_12109_length_238_cov_1.205128_g12000_i0 PRJNA1200128 12109 238 1.205128 2.86820464 Fusobacterium 848 Bacteria Bacteria 440 3.899999999999999e-119   NTclustered gi|2704983719|gb|CP077132.1| 851 g12000 i0 100 498.991596638655 238 0 100 0 1 238 93685 93922 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 118760 440 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17622448 17622448 PRJNA1200128_S_NODE_28334_length_182_cov_1.539568_g28225_i0 PRJNA1200128 28334 182 1.539568 2.80201376 root 1 Root_unresolved Root_unresolved 337 3.82e-88   NTclustered gi|1756501895|gb|MN537503.1| 852 g28225 i0 100 100 182 0 100 0 1 182 743 562 Fusobacterium perfoetens strain DSM 105865 16S ribosomal RNA gene, partial sequence blastn 18200 337 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;