RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1200128" and tax_clade = "Metamonada"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1200128 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17622420 17622420 PRJNA1200128_S_NODE_12934_length_233_cov_1.236842_g12825_i0 PRJNA1200128 12934 233 1.236842 2.88184186 Tritrichomonas 5723 Parabasalia other_Eukaryota 431 2.2899999999999996e-116   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g12825 i0 100 98.8068669527897 233 0 100 0 1 233 575 807 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 23022 431 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
26629393 26629393 PRJNA1200128_S_NODE_7061_length_282_cov_1.966527_g6952_i0 PRJNA1200128 7061 282 1.966527 5.54560614 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 41.2 0.037   NR KAH0788865.1 135588 g6952 i0 48.8 0.457446808510638 43 20 45.7 2 130 2 2 42 KAH0788865.1 hypothetical protein GPJ56_007234 [Histomonas meleagridis] diamond 129 41.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;