contig_metadata
5 rows where bioproject = "PRJNA1200128", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4153970 | 4153970 | PRJNA1200128_S_NODE_11424_length_242_cov_2.065327_g11315_i0 | PRJNA1200128 | 11424 | 242 | 2.065327 | 4.99809134 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 368 | 1.91e-97 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g11315 | i0 | 94.538 | 293.351239669421 | 238 | 13 | 98 | 0 | 5 | 242 | 2075464 | 2075701 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 70991 | 368 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 22721586 | 22721586 | PRJNA1200128_S_NODE_19258_length_206_cov_1.214724_g19149_i0 | PRJNA1200128 | 19258 | 206 | 1.214724 | 2.50233144 | Gemmatimonas | 173479 | Bacteria | Bacteria | 348 | 2.05e-91 | NTclustered | gi|470475286|ref|NR_076270.1| | 173480 | g19149 | i0 | 97.087 | 14.3592233009709 | 206 | 6 | 100 | 0 | 1 | 206 | 1116 | 911 | Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence | blastn | 2958 | 348 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas aurantiaca | |
| 27925428 | 27925428 | PRJNA1200128_S_NODE_25145_length_189_cov_3.986301_g25036_i0 | PRJNA1200128 | 25145 | 189 | 3.986301 | 7.53410889 | uncultured Gemmatimonadota bacterium | 203437 | Bacteria | Bacteria | 42 | 0.0334 | NR | CAA9357349.1 | 203437 | g25036 | i0 | 49.2 | 0.936507936507937 | 59 | 28 | 92.1 | 2 | 5 | 178 | 264 | 321 | CAA9357349.1 MAG: Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, partial [uncultured Gemmatimonadota bacterium] | diamond | 177 | 42 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | uncultured Gemmatimonadota bacterium | |||||
| 30198736 | 30198736 | PRJNA1200128_S_NODE_37672_length_165_cov_1.926230_g37563_i0 | PRJNA1200128 | 37672 | 165 | 1.92623 | 3.1782795 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 42.4 | 0.0164 | NR | HEX6627373.1 | 2026741 | g37563 | i0 | 44.7 | 0.854545454545454 | 47 | 25 | 83.6 | 1 | 149 | 12 | 14 | 60 | HEX6627373.1 hypothetical protein [Gemmatimonadaceae bacterium] | diamond | 141 | 42.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 31747630 | 31747630 | PRJNA1200128_S_NODE_16057_length_217_cov_13.373563_g15948_i0 | PRJNA1200128 | 16057 | 217 | 13.373563 | 29.02063171 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 42 | 0.0498 | NR | MEX1999700.1 | 2448054 | g15948 | i0 | 43.9 | 0.566820276497696 | 41 | 23 | 56.7 | 0 | 2 | 124 | 140 | 180 | MEX1999700.1 hemolysin family protein [Gemmatimonadales bacterium] | diamond | 123 | 42 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;