RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1199893" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1199893 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18178465 18178465 PRJNA1199893_P_NODE_4075_length_474_cov_7.074813_g4002_i0 PRJNA1199893 4075 474 7.074813 33.53461362 Brugia malayi 6279 Nematoda Nematoda 58.4 0.001   NTclustered gi|2082283509|ref|XM_001894896.2| 6279 g4002 i0 97.059 0.0717299578059072 34 1 7 0 171 204 203 170 Brugia malayi uncharacterized protein (Bm10375), partial mRNA blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
28335837 28335837 PRJNA1199893_P_NODE_12746_length_267_cov_1.278351_g12671_i0 PRJNA1199893 12746 267 1.278351 3.41319717 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 78.2 1.29e-14   NR KAE9550317.1 2598192 g12671 i0 57.8 0.719101123595506 64 27 71.9 0 19 210 315 378 KAE9550317.1 hypothetical protein FO519_006477 [Halicephalobus sp. NKZ332] diamond 192 78.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
29156996 29156996 PRJNA1199893_P_NODE_11989_length_277_cov_0.926471_g11914_i0 PRJNA1199893 11989 277 0.926471 2.56632467 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 60.1 4.13e-8   NR CAD5208038.1 6326 g11914 i0 36.8 0.942238267148014 87 51 89.9 1 273 25 208 294 CAD5208038.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 261 60.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;