RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1199893" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199893 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8697591 8697591 PRJNA1199893_P_NODE_17147_length_242_cov_0.911243_g17072_i0 PRJNA1199893 17147 242 0.911243 2.20520806 Listeria 1637 Bacteria Bacteria 52.8 0.022   NTclustered gi|1958359519|gb|CP068150.1| 1639 g17072 i0 96.875 2.3801652892562 32 0 13 1 94 124 2829987 2830018 Listeria monocytogenes strain FDAARGOS_1080 chromosome, complete genome blastn 576 52.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes
9972748 9972748 PRJNA1199893_P_NODE_16728_length_243_cov_0.905882_g16653_i0 PRJNA1199893 16728 243 0.905882 2.20129326 Lacticaseibacillus 2759736 Bacteria Bacteria 449 6.65e-122   NTclustered gi|1917898043|gb|CP049324.1| 1597 g16653 i0 100 100 243 0 100 0 1 243 1350986 1350744 Lacticaseibacillus paracasei strain NSMJ15 chromosome blastn 24300 449 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei
10530522 10530522 PRJNA1199893_P_NODE_14829_length_249_cov_0.875000_g14754_i0 PRJNA1199893 14829 249 0.875 2.17875 Streptococcus sp. 116-D4 2598453 Bacteria Bacteria 460 3.16e-125   NTclustered gi|1778008955|dbj|AP021887.1| 2598453 g14754 i0 100 328 249 0 100 0 1 249 19375 19127 Streptococcus sp. 116-D4 DNA, complete genome blastn 81672 460 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. 116-D4
17622379 17622379 PRJNA1199893_P_NODE_13614_length_257_cov_1.010870_g13539_i0 PRJNA1199893 13614 257 1.01087 2.5979359 Lacticaseibacillus 2759736 Bacteria Bacteria 475 1.1699999999999999e-129   NTclustered gi|1845309819|gb|CP053619.1| 47715 g13539 i0 100 455.933852140078 257 0 100 0 1 257 546695 546439 Lacticaseibacillus rhamnosus strain LV108 chromosome, complete genome blastn 117175 475 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus
18178418 18178418 PRJNA1199893_P_NODE_17575_length_241_cov_0.916667_g17500_i0 PRJNA1199893 17575 241 0.916667 2.20916747 Anaerococcus sp. Marseille-Q7828 3036300 Bacteria Bacteria 418 1.8599999999999995e-112   NTclustered gi|2472116327|emb|OX458331.1| 3036300 g17500 i0 97.925 587.634854771784 241 5 100 0 1 241 257160 256920 Anaerococcus sp. Marseille-Q7828 genome assembly, chromosome: contig00001 blastn 141620 418 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus sp. Marseille-Q7828
30388953 30388953 PRJNA1199893_P_NODE_15713_length_246_cov_1.086705_g15638_i0 PRJNA1199893 15713 246 1.086705 2.6732943 Lactiplantibacillus plantarum 1590 Bacteria Bacteria 47 1.65e-4   NR WP_252130143.1 1590 g15638 i0 87.5 1.75609756097561 24 3 29.3 0 3 74 66 89 WP_252130143.1 hypothetical protein, partial [Lactiplantibacillus plantarum] diamond 432 47 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum
30957430 30957430 PRJNA1199893_P_NODE_12014_length_276_cov_1.423645_g11939_i0 PRJNA1199893 12014 276 1.423645 3.9292602 Streptococcus pyogenes 1314 Bacteria Bacteria 49.7 1.72e-4   NR WP_317582632.1 1314 g11939 i0 54.4 0.619565217391304 57 24 59.8 2 74 238 27 83 WP_317582632.1 hypothetical protein, partial [Streptococcus pyogenes] diamond 171 49.7 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;