RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1199893" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1199893 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9254521 9254521 PRJNA1199893_P_NODE_10088_length_300_cov_1.533040_g10013_i0 PRJNA1199893 10088 300 1.53304 4.59912 Chlamydomonas reinhardtii 3055 Plants Plants 191 5.67e-44   NTclustered gi|2082259800|ref|XM_001690837.2| 3055 g10013 i0 78.621 1.73333333333333 290 60 96 2 1 289 1506 1794 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g485800v5), mRNA blastn 520 191 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9972752 9972752 PRJNA1199893_P_NODE_3668_length_501_cov_3.787383_g3595_i0 PRJNA1199893 3668 501 3.787383 18.97478883 Eukaryota 2759 Plants Plants 370 1.19e-97   NTclustered gi|2082260090|ref|XM_001690958.2| 3055 g3595 i0 87.5 61.4451097804391 320 40 64 0 113 432 49 368 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g506450v5), mRNA blastn 30784 370 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18178437 18178437 PRJNA1199893_P_NODE_2635_length_592_cov_3.797688_g2562_i0 PRJNA1199893 2635 592 3.797688 22.48231296 Chlamydomonas reinhardtii 3055 Plants Plants 261 8.94e-65   NTclustered gi|2082247535|ref|XM_043062986.1| 3055 g2562 i0 83.392 47.8513513513514 283 45 48 2 201 482 171 452 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g274200v5), mRNA blastn 28328 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;