RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1199330" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199330 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6702789 6702789 PRJNA1199330_P_NODE_110206_length_246_cov_1.803468_g109507_i0 PRJNA1199330 110206 246 1.803468 4.43653128 Fretibacterium fastidiosum 651822 Bacteria Bacteria 449 6.74e-122   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g109507 i0 99.593 112.260162601626 246 1 100 0 1 246 67426 67181 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 27616 449 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
27072488 27072488 PRJNA1199330_P_NODE_123962_length_213_cov_5.521429_g123263_i0 PRJNA1199330 123962 213 5.521429 11.76064377 Fretibacterium sp. 2699746 Bacteria Bacteria 88.6 2.33e-21   NR MFC2593865.1 2699746 g123263 i0 97.9 0.676056338028169 48 1 67.6 0 144 1 1 48 MFC2593865.1 hypothetical protein [Fretibacterium sp.] diamond 144 88.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;