RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1199330", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1199330 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27009171 27009171 PRJNA1199330_P_NODE_82982_length_270_cov_1.360406_g82283_i0 PRJNA1199330 82982 270 1.360406 3.6730962 Lingula anatina 7574 Brachiopoda other_Eukaryota 89.4 6.95e-20   NR XP_013414709.1 7574 g82283 i0 51.1 2 90 40 100 1 270 1 42 127 XP_013414709.1 HD domain-containing protein 2 [Lingula anatina] diamond 540 89.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27944336 27944336 PRJNA1199330_P_NODE_17785_length_485_cov_1.834951_g17092_i0 PRJNA1199330 17785 485 1.834951 8.89951235 Metazoa 33208 Brachiopoda other_Eukaryota 61.6 1.37e-7   NR XP_013411290.1 7574 g17092 i0 45.8 1.84329896907216 72 37 43.3 1 244 453 1301 1372 XP_013411290.1 uncharacterized protein LOC106174328 isoform X5 [Lingula anatina] diamond 894 62 0.993548387096774 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29661510 29661510 PRJNA1199330_P_NODE_28370_length_387_cov_2.318471_g27674_i0 PRJNA1199330 28370 387 2.318471 8.97248277 Lingula anatina 7574 Brachiopoda other_Eukaryota 62 3.42e-8   NR XP_013393421.1 7574 g27674 i0 41.5 1.0077519379845 65 34 47.3 1 205 387 27 91 XP_013393421.1 uncharacterized protein LOC106161105 isoform X1 [Lingula anatina] diamond 390 62 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;