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contig_metadata

10 rows where bioproject = "PRJNA1199330", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 10 ✖

tax_clade 1

  • Sar · 10 ✖

bioproject 1

  • PRJNA1199330 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4152315 4152315 PRJNA1199330_P_NODE_25224_length_409_cov_2.232143_g24528_i0 PRJNA1199330 25224 409 2.232143 9.12946487 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 115 4.94e-21   NTclustered gi|675199294|ref|XM_008910284.1| 761204 g24528 i0 84.956 1.05867970660147 113 17 28 0 256 368 310 422 Phytophthora parasitica INRA-310 ubiquitin-conjugating enzyme E2 N mRNA blastn 433 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
10528868 10528868 PRJNA1199330_P_NODE_115089_length_243_cov_0.917647_g114390_i0 PRJNA1199330 115089 243 0.917647 2.22988221 Phytophthora mirabilis 129356 SAR_Eukaryotes SAR_Eukaryotes 135 2.11e-27   NTclustered gi|1233049529|gb|KX250492.1| 129356 g114390 i0 78.641 49.9135802469136 206 40 84 3 5 208 1662 1459 Phytophthora mirabilis isolate 30C2(authentic) heat shock protein 90 gene, partial cds blastn 12129 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora mirabilis
19451016 19451016 PRJNA1199330_P_NODE_108176_length_247_cov_4.189655_g107477_i0 PRJNA1199330 108176 247 4.189655 10.34844785 Phytophthora lilii 2077276 SAR_Eukaryotes SAR_Eukaryotes 154 5.95e-33   NTclustered gi|829497274|dbj|AB856779.1| 2077276 g107477 i0 79.545 14.178137651821899 220 41 88 4 29 246 1 218 Phytophthora lilii gene for ribosomal protein L10, partial cds, isolate: EL_8701 blastn 3502 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora lilii
26692637 26692637 PRJNA1199330_P_NODE_114981_length_243_cov_0.917647_g114282_i0 PRJNA1199330 114981 243 0.917647 2.22988221 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 87.8 4.88e-18   NR KUF94861.1 4792 g114282 i0 52.5 1.97530864197531 80 36 98.8 2 241 2 298 375 KUF94861.1 hypothetical protein AM588_10008023 [Phytophthora nicotianae] diamond 480 87.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
27862110 27862110 PRJNA1199330_P_NODE_28905_length_384_cov_1.469453_g28209_i0 PRJNA1199330 28905 384 1.469453 5.64269952 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 88.6 3.95e-20   NR DAZ97608.1 4803 g28209 i0 50 0.71875 92 38 70.3 4 114 383 3 88 DAZ97608.1 TPA: hypothetical protein N0F65_002227 [Lagenidium giganteum] diamond 276 88.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
28512567 28512567 PRJNA1199330_P_NODE_29847_length_378_cov_2.691803_g29151_i0 PRJNA1199330 29847 378 2.691803 10.17501534 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.026   NR KAG7393615.1 221518 g29151 i0 34.1 1.35714285714286 85 44 58.7 3 358 137 693 776 KAG7393615.1 Ankyrin repeat and death domain-containing protein 1B [Phytophthora pseudosyringae] diamond 513 45.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora pseudosyringae
29914755 29914755 PRJNA1199330_P_NODE_108571_length_247_cov_2.310345_g107872_i0 PRJNA1199330 108571 247 2.310345 5.70655215 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 73.2 7e-13   NR KAJ0409873.1 114742 g107872 i0 53.8 3.91093117408907 80 31 97.2 2 242 3 5 78 KAJ0409873.1 hypothetical protein P43SY_005767 [Pythium insidiosum] diamond 966 73.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
30262401 30262401 PRJNA1199330_P_NODE_86292_length_266_cov_4.409326_g85593_i0 PRJNA1199330 86292 266 4.409326 11.72880716 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0198   NR CCA26542.1 890382 g85593 i0 41.3 1.93984962406015 46 27 51.9 0 228 91 1105 1150 CCA26542.1 conserved hypothetical protein [Albugo laibachii Nc14] diamond 516 43.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
31071050 31071050 PRJNA1199330_P_NODE_99275_length_254_cov_1.254144_g98576_i0 PRJNA1199330 99275 254 1.254144 3.18552576 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 57 3.13e-7   NR KAF1335475.1 82926 g98576 i0 61.9 2.44488188976378 42 15 48.4 1 28 150 75 116 KAF1335475.1 Zinc finger domain containing protein, partial [Globisporangium splendens] diamond 621 57 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
32444039 32444039 PRJNA1199330_P_NODE_113219_length_244_cov_1.543860_g112520_i0 PRJNA1199330 113219 244 1.54386 3.7670184 Phytophthora palmivora 4796 SAR_Eukaryotes SAR_Eukaryotes 50.8 3.47e-5   NR POM63637.1 4796 g112520 i0 49.1 0.676229508196721 55 28 67.6 0 6 170 162 216 POM63637.1 Ankyrin repeat domain containing hypothetical protein [Phytophthora palmivora] diamond 165 50.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;