RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1199330", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1199330 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27028207 27028207 PRJNA1199330_P_NODE_116802_length_241_cov_2.428571_g116103_i0 PRJNA1199330 116802 241 2.428571 5.85285611 Pseudomonadati 3379134 Bacteria Bacteria 42.4 0.0484   NR MFA7685418.1 2044595 g116103 i0 57.6 0.970954356846473 33 14 41.1 0 101 3 465 497 MFA7685418.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 234 42.7 0.992974238875878 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31494806 31494806 PRJNA1199330_P_NODE_70336_length_281_cov_2.533654_g69637_i0 PRJNA1199330 70336 281 2.533654 7.11956774 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 80.5 3.1e-15   NR MFA7685418.1 2044595 g69637 i0 43.2 2.73309608540925 81 46 86.5 0 16 258 442 522 MFA7685418.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 768 80.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;