RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1199330" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1199330 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28714794 28714794 PRJNA1199330_P_NODE_14627_length_536_cov_1.645788_g13938_i0 PRJNA1199330 14627 536 1.645788 8.82142368 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 75.5 3.2e-12   NR XP_013761942.1 461836 g13938 i0 32.8 0.716417910447761 128 86 71.6 0 60 443 515 642 XP_013761942.1 MmpL efflux pump [Thecamonas trahens ATCC 50062] diamond 384 75.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30830791 30830791 PRJNA1199330_P_NODE_23254_length_425_cov_2.406250_g22559_i0 PRJNA1199330 23254 425 2.40625 10.2265625 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 63.9 1.14e-8   NR XP_013756678.1 461836 g22559 i0 49 0.345882352941176 49 25 34.6 0 164 18 332 380 XP_013756678.1 uncharacterized protein AMSG_12050 [Thecamonas trahens ATCC 50062] diamond 147 63.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;