RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA1199330", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA1199330 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
326196 326196 PRJNA1199330_P_NODE_86601_length_266_cov_2.414508_g85902_i0 PRJNA1199330 86601 266 2.414508 6.42259128 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 82 7.51e-16   NR KAH3766598.1 1580589 g85902 i0 44.2 3.92481203007519 86 48 97 0 1 258 599 684 KAH3766598.1 Cyclic nucleotide phosphodiesterase [Pelomyxa schiedti] diamond 1044 82 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
3594369 3594369 PRJNA1199330_P_NODE_112243_length_245_cov_0.906977_g111544_i0 PRJNA1199330 112243 245 0.906977 2.22209365 Acanthamoeba 5754 Discosea other_Eukaryota 420 5.26e-113   NTclustered gi|909719694|gb|KT185628.1| 5755 g111544 i0 97.551 104.420408163265 245 6 100 0 1 245 2589 2345 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 25583 420 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27830610 27830610 PRJNA1199330_P_NODE_2744_length_1290_cov_4.860312_g2418_i0 PRJNA1199330 2744 1290 4.860312 62.6980248 Physarum polycephalum 5791 Evosea other_Eukaryota 210 2.78e-62   NR ABD72560.1 5791 g2418 i0 55.3 0.462790697674419 199 84 45.6 2 686 1273 1 197 ABD72560.1 chitinase-like protein cluster D, partial [Physarum polycephalum] diamond 597 210 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
28462367 28462367 PRJNA1199330_P_NODE_26086_length_403_cov_1.393939_g25390_i0 PRJNA1199330 26086 403 1.393939 5.61757417 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 114 1.3600000000000002e-26   NR KAH3761845.1 1580589 g25390 i0 40 1.94292803970223 130 78 96.8 0 394 5 537 666 KAH3761845.1 von willebrand factor type A domain protein [Pelomyxa schiedti] diamond 783 114 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28935830 28935830 PRJNA1199330_P_NODE_76768_length_275_cov_3.945545_g76069_i0 PRJNA1199330 76768 275 3.945545 10.85024875 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 54.3 4.56e-6   NR KAH3765554.1 1580589 g76069 i0 39.6 0.523636363636364 48 26 49.1 1 41 175 3 50 KAH3765554.1 hypothetical protein Pelo_2594 [Pelomyxa schiedti] diamond 144 54.3 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29093792 29093792 PRJNA1199330_P_NODE_80708_length_272_cov_1.567839_g80009_i0 PRJNA1199330 80708 272 1.567839 4.26452208 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 54.3 4.46e-6   NR KAH3763163.1 1580589 g80009 i0 39.1 0.959558823529412 87 50 96 1 267 7 460 543 KAH3763163.1 Stonustoxin subunit alpha [Pelomyxa schiedti] diamond 261 54.3 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30565022 30565022 PRJNA1199330_P_NODE_103073_length_251_cov_1.719101_g102374_i0 PRJNA1199330 103073 251 1.719101 4.31494351 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 77 1.65e-14   NR XP_004335961.1 1257118 g102374 i0 44.4 1.81673306772908 72 40 86.1 0 36 251 28 99 XP_004335961.1 endonuclease [Acanthamoeba castellanii str. Neff] diamond 456 77 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31368395 31368395 PRJNA1199330_P_NODE_92756_length_260_cov_2.850267_g92057_i0 PRJNA1199330 92756 260 2.850267 7.4106942 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.9 1.47e-9   NR XP_004367869.1 1257118 g92057 i0 51.4 0.807692307692308 70 32 78.5 1 1 204 289 358 XP_004367869.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 210 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31874161 31874161 PRJNA1199330_P_NODE_58897_length_291_cov_2.715596_g58198_i0 PRJNA1199330 58897 291 2.715596 7.90238436 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 156 9.159999999999999e-43   NR XP_004358245.1 1257118 g58198 i0 74 1.97938144329897 96 24 97.9 1 287 3 107 202 XP_004358245.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 576 156 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32095679 32095679 PRJNA1199330_P_NODE_96258_length_257_cov_1.554348_g95559_i0 PRJNA1199330 96258 257 1.554348 3.99467436 Physarum polycephalum 5791 Evosea other_Eukaryota 90.5 2.89e-20   NR ABD72560.1 5791 g95559 i0 52.4 0.980544747081712 84 40 98.1 0 253 2 112 195 ABD72560.1 chitinase-like protein cluster D, partial [Physarum polycephalum] diamond 252 90.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
32715049 32715049 PRJNA1199330_P_NODE_30660_length_373_cov_2.840000_g29964_i0 PRJNA1199330 30660 373 2.84 10.5932 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.5 2.27e-18   NR XP_020429292.1 670386 g29964 i0 43 4.14209115281501 100 52 80.4 2 21 320 6 100 XP_020429292.1 delta 5 fatty acid desaturase [Heterostelium album PN500] diamond 1545 90.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32885023 32885023 PRJNA1199330_P_NODE_13540_length_558_cov_3.204124_g12856_i0 PRJNA1199330 13540 558 3.204124 17.87901192 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 73.2 2.52e-11   NR PRP85873.1 1890364 g12856 i0 40.9 0.989247311827957 93 50 49.5 3 135 410 657 745 PRP85873.1 hypothetical protein PROFUN_06147 [Planoprotostelium fungivorum] diamond 552 73.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;