RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1198392" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1198392 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15071450 15071450 PRJNA1198392_P_NODE_13392_length_265_cov_1.604167_g13251_i0 PRJNA1198392 13392 265 1.604167 4.25104255 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 440 4.419999999999998e-119   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g13251 i0 99.585 72.0037735849057 241 1 91 0 1 241 1748 1988 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 19081 440 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
23276721 23276721 PRJNA1198392_P_NODE_15819_length_251_cov_0.865169_g15678_i0 PRJNA1198392 15819 251 0.865169 2.17157419 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 459 1.1499999999999996e-124   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g15678 i0 99.602 66.0996015936255 251 1 100 0 1 251 2897 2647 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16591 459 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
31905801 31905801 PRJNA1198392_P_NODE_15617_length_251_cov_1.730337_g15476_i0 PRJNA1198392 15617 251 1.730337 4.34314587 Acrasis kona 1008807 Heterolobosea other_Eukaryota 97.4 5.3e-23   NR KAL0491095.1 1008807 g15476 i0 75 0.717131474103586 60 15 71.7 0 1 180 129 188 KAL0491095.1 Ras-related protein Rab [Acrasis kona] diamond 180 97.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32159116 32159116 PRJNA1198392_P_NODE_12218_length_271_cov_1.555556_g12077_i0 PRJNA1198392 12218 271 1.555556 4.21555676 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 59.7 5.81e-8   NR XP_002674608.1 5762 g12077 i0 42.5 6.7970479704797 80 43 88.6 1 240 1 245 321 XP_002674608.1 uncharacterized protein NAEGRDRAFT_70209 [Naegleria gruberi] diamond 1842 60.1 0.993344425956739 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;