RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA1198392", tax_kingdom = "Metazoa" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 8 ✖

tax_kingdom 1

  • Metazoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1198392 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11803299 11803299 PRJNA1198392_P_NODE_650_length_938_cov_7.885549_g540_i0 PRJNA1198392 650 938 7.885549 73.96644962 Brachionus rubens 392764 Rotifera other_Eukaryota 472 6.14e-128   NTclustered gi|1802791198|gb|MN256531.1| 392764 g540 i0 82.531 30.3027718550107 561 75 59 18 339 888 11253 11801 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 28424 472 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
14353547 14353547 PRJNA1198392_P_NODE_16692_length_249_cov_2.335227_g16551_i0 PRJNA1198392 16692 249 2.335227 5.81471523 Didymodactylos carnosus 1234261 Rotifera other_Eukaryota 119 1.72e-30   NR CAF1040579.1 1234261 g16551 i0 67.9 7.07228915662651 84 26 100 1 249 1 172 255 CAF1040579.1 unnamed protein product [Didymodactylos carnosus] diamond 1761 119 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Didymodactylos Didymodactylos carnosus
15071459 15071459 PRJNA1198392_P_NODE_15132_length_254_cov_2.502762_g14991_i0 PRJNA1198392 15132 254 2.502762 6.35701548 Asplanchna 84396 Rotifera other_Eukaryota 219 2.1499999999999998e-52   NTclustered gi|2899343712|gb|PQ788833.1| 2005548 g14991 i0 83.402 14.6850393700787 241 35 94 5 16 254 2124 2361 Asplanchna brightwellii chromosome I mitochondrion, complete sequence blastn 3730 219 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna brightwellii
26851240 26851240 PRJNA1198392_P_NODE_5641_length_338_cov_1.267925_g5500_i0 PRJNA1198392 5641 338 1.267925 4.2855865 Adineta ricciae 249248 Rotifera other_Eukaryota 51.2 1.05e-4   NR CAF1506221.1 249248 g5500 i0 33 4.4112426035503 97 53 82.5 4 296 18 183 271 CAF1506221.1 unnamed protein product [Adineta ricciae] diamond 1491 51.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
27262276 27262276 PRJNA1198392_P_NODE_8103_length_291_cov_1.866972_g7962_i0 PRJNA1198392 8103 291 1.866972 5.43288852 Rotaria magnacalcarata 392030 Rotifera other_Eukaryota 71.6 1.6e-12   NR CAF5177193.1 392030 g7962 i0 37.5 3.65979381443299 96 59 99 1 1 288 145 239 CAF5177193.1 unnamed protein product, partial [Rotaria magnacalcarata] diamond 1065 71.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
29396660 29396660 PRJNA1198392_P_NODE_11429_length_275_cov_1.524752_g11288_i0 PRJNA1198392 11429 275 1.524752 4.193068 Brachionus 10194 Rotifera other_Eukaryota 120 9.18e-30   NR YP_001739869.1 10195 g11288 i0 67 4.96363636363636 91 30 99.3 0 2 274 313 403 YP_001739869.1 NADH dehydrogenase subunit 5 [Brachionus plicatilis] diamond 1365 120 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
30325839 30325839 PRJNA1198392_P_NODE_18432_length_246_cov_1.462428_g18291_i0 PRJNA1198392 18432 246 1.462428 3.59757288 Brachionus rotundiformis 96890 Rotifera other_Eukaryota 52.8 1.15e-5   NR AOP18530.1 96890 g18291 i0 40.3 0.939024390243902 77 46 93.9 0 10 240 424 500 AOP18530.1 NADH dehydrogenase subunit 5 [Brachionus rotundiformis] diamond 231 52.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rotundiformis
31829683 31829683 PRJNA1198392_P_NODE_9157_length_286_cov_1.446009_g9016_i0 PRJNA1198392 9157 286 1.446009 4.13558574 Brachionus 10194 Rotifera other_Eukaryota 185 1.77e-52   NR RNA30477.1 10195 g9016 i0 91.6 1.99300699300699 95 8 99.7 0 2 286 542 636 RNA30477.1 dolichyl-diphosphooligosaccharide-- glycosyltransferase subunit STT3B [Brachionus plicatilis] diamond 570 186 0.99462365591397806 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;