RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1198392", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1198392 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22001490 22001490 PRJNA1198392_P_NODE_6878_length_310_cov_3.071730_g6737_i0 PRJNA1198392 6878 310 3.07173 9.522363 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 75 6.18e-9   NTclustered gi|1752400785|ref|XM_030973137.1| 7668 g6737 i0 95.652 2.3741935483871 46 2 15 0 212 257 633 678 PREDICTED: Strongylocentrotus purpuratus loricrin-like (LOC105447341), partial mRNA blastn 736 75 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
29377769 29377769 PRJNA1198392_P_NODE_12089_length_272_cov_1.351759_g11948_i0 PRJNA1198392 12089 272 1.351759 3.67678448 Patiria miniata 46514 Echinodermata other_Eukaryota 74.7 3.1e-13   NR XP_038044107.1 46514 g11948 i0 52.9 2.27205882352941 70 32 76.1 1 65 271 1018 1087 XP_038044107.1 DNA polymerase theta-like [Patiria miniata] diamond 618 74.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;