RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1198392", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1198392 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
324457 324457 PRJNA1198392_P_NODE_12701_length_269_cov_1.260204_g12560_i0 PRJNA1198392 12701 269 1.260204 3.38994876 Metamycoplasma faucium 56142 Bacteria Bacteria 492 1.23e-134   NTclustered gi|2708452869|gb|CP088155.1| 56142 g12560 i0 99.628 37.0408921933086 269 1 100 0 1 269 753172 753440 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 9964 492 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
4151751 4151751 PRJNA1198392_P_NODE_8844_length_288_cov_0.972093_g8703_i0 PRJNA1198392 8844 288 0.972093 2.79962784 Metamycoplasma faucium 56142 Bacteria Bacteria 460 3.74e-125   NTclustered gi|2921905358|gb|CP182786.1| 56142 g8703 i0 95.486 2.09722222222222 288 13 100 0 1 288 19174 18887 Metamycoplasma faucium strain DC-333 chromosome, complete genome blastn 604 460 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
30894180 30894180 PRJNA1198392_P_NODE_18394_length_246_cov_1.780347_g18253_i0 PRJNA1198392 18394 246 1.780347 4.37965362 Mycoplasmopsis arginini 2094 Bacteria Bacteria 119 1.98e-29   NR WP_206602619.1 2094 g18253 i0 87.1 1.70731707317073 70 9 85.4 0 245 36 485 554 WP_206602619.1 cbb3-type cytochrome c oxidase subunit I [Mycoplasmopsis arginini] diamond 420 120 0.991666666666667 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;