RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1198392", tax_clade = "Stenosarchaea group" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1198392 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7978006 7978006 PRJNA1198392_P_NODE_20027_length_243_cov_1.358824_g19886_i0 PRJNA1198392 20027 243 1.358824 3.30194232 uncultured Methanospirillum sp. 262503 Archaea Archaea 54.7 0.006   NTclustered gi|2621706206|emb|OY764544.1| 262503 g19886 i0 100 0.119341563786008 29 0 12 0 35 63 2517991 2517963 MAG: uncultured Methanospirillum sp. isolate ae1c6b73-8e60-4006-a0f9-e2019dc13642 genome assembly, chromosome: 1 blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum uncultured Methanospirillum sp.
24550747 24550747 PRJNA1198392_P_NODE_20060_length_243_cov_0.905882_g19919_i0 PRJNA1198392 20060 243 0.905882 2.20129326 Halorussus limi 2938695 Archaea Archaea 111 3.56e-20   NTclustered gi|2234300126|gb|CP096659.1| 2938695 g19919 i0 84.348 1.44444444444444 115 17 49 1 127 241 1300741 1300628 Halorussus limi strain XZYJT49 chromosome, complete genome blastn 351 111 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus limi
30691690 30691690 PRJNA1198392_P_NODE_13013_length_267_cov_1.587629_g12872_i0 PRJNA1198392 13013 267 1.587629 4.23896943 root 1 Root_unresolved Root_unresolved 81.3 5.57e-16   NR WP_292538662.1 90426 g12872 i0 87.8 1.84269662921348 41 5 46.1 0 123 1 1 41 WP_292538662.1 glycosyltransferase family 2 protein [Methanothrix sp.] diamond 492 81.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;