RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1198392", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1198392 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26945866 26945866 PRJNA1198392_P_NODE_9242_length_286_cov_1.272300_g9101_i0 PRJNA1198392 9242 286 1.2723 3.638778 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 48.5 1.52e-4   NR HEY4951770.1 2499141 g9101 i0 50 0.461538461538462 44 22 46.2 0 90 221 80 123 HEY4951770.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 132 48.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27376232 27376232 PRJNA1198392_P_NODE_14863_length_256_cov_1.683060_g14722_i0 PRJNA1198392 14863 256 1.68306 4.3086336 Chthoniobacter 295577 Bacteria Bacteria 122 5.6399999999999995e-30   NR WP_006977497.1 191863 g14722 i0 75.9 7.828125 83 20 97.3 0 6 254 454 536 WP_006977497.1 ATP-dependent RNA helicase HrpA [Chthoniobacter flavus] diamond 2004 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
28556990 28556990 PRJNA1198392_P_NODE_12747_length_268_cov_2.656410_g12606_i0 PRJNA1198392 12747 268 2.65641 7.1191788 Limisphaerales bacterium 2052186 Bacteria Bacteria 53.1 1.15e-5   NR MFN0067579.1 2052186 g12606 i0 45.3 0.593283582089552 53 29 59.3 0 168 10 600 652 MFN0067579.1 LamG-like jellyroll fold domain-containing protein [Limisphaerales bacterium] diamond 159 53.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium
28809108 28809108 PRJNA1198392_P_NODE_18588_length_246_cov_0.890173_g18447_i0 PRJNA1198392 18588 246 0.890173 2.18982558 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 133 1.7999999999999998e-36   NR RYD81718.1 2026800 g18447 i0 80 1.96341463414634 80 16 97.6 0 3 242 20 99 RYD81718.1 MAG: AI-2E family transporter [Verrucomicrobiaceae bacterium] diamond 483 133 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31052255 31052255 PRJNA1198392_P_NODE_19355_length_244_cov_3.210526_g19214_i0 PRJNA1198392 19355 244 3.210526 7.83368344 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 92.8 7.98e-20   NR MDB6032852.1 2026801 g19214 i0 50 0.909836065573771 74 37 91 0 3 224 66 139 MDB6032852.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 222 92.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31652586 31652586 PRJNA1198392_P_NODE_16677_length_249_cov_3.284091_g16536_i0 PRJNA1198392 16677 249 3.284091 8.17738659 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 51.6 2.72e-5   NR HEU4679860.1 2832348 g16536 i0 46 1.24096385542169 50 27 60.2 0 160 11 182 231 HEU4679860.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 309 51.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
32000751 32000751 PRJNA1198392_P_NODE_16578_length_250_cov_0.870056_g16437_i0 PRJNA1198392 16578 250 0.870056 2.17514 Opitutaceae bacterium 2006848 Bacteria Bacteria 106 3.4999999999999997e-25   NR MFA5056512.1 2006848 g16437 i0 56.6 0.996 83 36 99.6 0 2 250 207 289 MFA5056512.1 major capsid protein [Opitutaceae bacterium] diamond 249 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;