RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1198392", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1198392 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24550924 24550924 PRJNA1198392_P_NODE_8360_length_290_cov_1.119816_g8219_i0 PRJNA1198392 8360 290 1.119816 3.2474664 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 178 4.25e-40   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g8219 i0 80.579 7.64827586206897 242 38 82 7 26 264 975155 974920 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 2218 178 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
28588597 28588597 PRJNA1198392_P_NODE_10267_length_281_cov_1.480769_g10126_i0 PRJNA1198392 10267 281 1.480769 4.16096089 Rhodothermales bacterium 2306054 Bacteria Bacteria 91.7 2.8e-19   NR MBE2185586.1 2306054 g10126 i0 58.7 0.98220640569395 92 37 98.2 1 281 6 15 105 MBE2185586.1 HAMP domain-containing histidine kinase [Rhodothermales bacterium] diamond 276 91.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;