RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1198392", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1198392 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9252448 9252448 PRJNA1198392_P_NODE_14708_length_257_cov_1.673913_g14567_i0 PRJNA1198392 14708 257 1.673913 4.30195641 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 431 2.57e-116   NTclustered gi|470525569|ref|XM_004356569.1| 1257118 g14567 i0 96.887 1.45525291828794 257 8 100 0 1 257 679 935 Acanthamoeba castellanii str. Neff mitochondrial phosphate transporter, putative (ACA1_173800), partial mRNA blastn 374 431 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29282881 29282881 PRJNA1198392_P_NODE_9909_length_283_cov_1.204762_g9768_i0 PRJNA1198392 9909 283 1.2047620000000001 3.40947646 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 3.97e-24   NR XP_004334918.1 1257118 g9768 i0 62 2.53356890459364 79 30 83.7 0 243 7 726 804 XP_004334918.1 ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 717 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32127519 32127519 PRJNA1198392_P_NODE_16718_length_249_cov_1.750000_g16577_i0 PRJNA1198392 16718 249 1.75 4.3575 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 102 1.2e-23   NR XP_004368228.1 1257118 g16577 i0 64.9 5.60240963855422 77 27 92.8 0 245 15 220 296 XP_004368228.1 guanine nucleotide-binding protein alpha-5 subunit, putative [Acanthamoeba castellanii str. Neff] diamond 1395 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;