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contig_metadata

37 rows where bioproject = "PRJNA1197996" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 37 ✖

bioproject 1

  • PRJNA1197996 · 37 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2874972 2874972 PRJNA1197996_S_NODE_29123_length_234_cov_2.192547_g29069_i0 PRJNA1197996 29123 234 2.192547 5.13055998 archaeon 1906665 Archaea Archaea 85.9 2.18e-17   NR RYH11893.1 1906665 g29069 i0 55.4 0.948717948717949 74 32 93.6 1 222 4 529 602 RYH11893.1 MAG: GTP-binding protein [archaeon] diamond 222 85.9 1 Archaea               archaeon
2875007 2875007 PRJNA1197996_S_NODE_3703_length_456_cov_2.947781_g3649_i0 PRJNA1197996 3703 456 2.947781 13.44188136 archaeon 1906665 Archaea Archaea 159 1.74e-44   NR RYG67480.1 1906665 g3649 i0 76.6 0.730263157894737 111 26 73 0 456 124 233 343 RYG67480.1 MAG: ADP-forming succinate--CoA ligase subunit beta [archaeon] diamond 333 159 1 Archaea               archaeon
7421520 7421520 PRJNA1197996_S_NODE_20886_length_262_cov_2.857143_g20832_i0 PRJNA1197996 20886 262 2.857143 7.48571466 root 1 Root_unresolved Root_unresolved 442 1.2099999999999994e-119   NTclustered gi|2515741548|gb|CP117271.1| 2209 g20832 i0 100 133.610687022901 239 0 91 0 1 239 3940903 3940665 Mutant Methanosarcina mazei strain Mm Mut 208, complete genome blastn 35006 444 0.995495495495496 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
13077793 13077793 PRJNA1197996_S_NODE_28531_length_241_cov_0.916667_g28477_i0 PRJNA1197996 28531 241 0.916667 2.20916747 archaeon 1906665 Archaea Archaea 68.9 1.84e-13   NR RYG65594.1 1906665 g28477 i0 87.2 0.485477178423237 39 5 48.5 0 3 119 8 46 RYG65594.1 MAG: hypothetical protein EON64_11590, partial [archaeon] diamond 117 68.9 1 Archaea               archaeon
16346247 16346247 PRJNA1197996_S_NODE_8073_length_357_cov_3.221831_g8019_i0 PRJNA1197996 8073 357 3.221831 11.50193667 archaeon 1906665 Archaea Archaea 73.9 3.19e-14   NR RYG69109.1 1906665 g8019 i0 56.5 0.714285714285714 85 32 67.2 1 3 242 31 115 RYG69109.1 MAG: hypothetical protein EON64_03535 [archaeon] diamond 255 73.9 1 Archaea               archaeon
20725359 20725359 PRJNA1197996_S_NODE_20937_length_262_cov_1.629630_g20883_i0 PRJNA1197996 20937 262 1.62963 4.2696306 archaeon 1906665 Archaea Archaea 154 2.0299999999999994e-42   NR RYH29807.1 1906665 g20883 i0 94.2 0.984732824427481 86 5 98.5 0 260 3 347 432 RYH29807.1 MAG: AAA family ATPase, partial [archaeon] diamond 258 154 1 Archaea               archaeon
24549986 24549986 PRJNA1197996_S_NODE_1300_length_650_cov_2.242634_g1255_i0 PRJNA1197996 1300 650 2.242634 14.577121 Methanothermobacter wolfeii 145261 Archaea Archaea 54.7 0.018   NTclustered gi|2308640859|gb|CP104550.1| 145261 g1255 i0 96.875 0.0984615384615385 32 1 5 0 152 183 219384 219415 Methanothermobacter wolfeii strain DSM 2970 chromosome, complete genome blastn 64 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter wolfeii
24550046 24550046 PRJNA1197996_S_NODE_16260_length_286_cov_2.394366_g16206_i0 PRJNA1197996 16260 286 2.394366 6.84788676 archaeon 1906665 Archaea Archaea 151 3.15e-42   NR RYH24578.1 1906665 g16206 i0 88.3 0.807692307692308 77 9 80.8 0 1 231 299 375 RYH24578.1 MAG: GTP-binding protein [archaeon] diamond 231 151 1 Archaea               archaeon
27799241 27799241 PRJNA1197996_S_NODE_21644_length_259_cov_1.241935_g21590_i0 PRJNA1197996 21644 259 1.241935 3.21661165 archaeon 1906665 Archaea Archaea 83.2 2.13e-18   NR RYH13119.1 1906665 g21590 i0 57.4 0.706563706563707 61 26 70.7 0 259 77 50 110 RYH13119.1 MAG: hypothetical protein EON65_36440 [archaeon] diamond 183 83.2 1 Archaea               archaeon
27988545 27988545 PRJNA1197996_S_NODE_8745_length_349_cov_1.394928_g8691_i0 PRJNA1197996 8745 349 1.394928 4.86829872 archaeon 1906665 Archaea Archaea 164 4.22e-44   NR RYH24941.1 1906665 g8691 i0 62.9 0.997134670487106 116 43 99.7 0 348 1 553 668 RYH24941.1 MAG: hypothetical protein EON65_16165 [archaeon] diamond 348 164 1 Archaea               archaeon
28020234 28020234 PRJNA1197996_S_NODE_16525_length_285_cov_1.089623_g16471_i0 PRJNA1197996 16525 285 1.089623 3.10542555 archaeon 1906665 Archaea Archaea 58.2 2.47e-7   NR RYH26309.1 1906665 g16471 i0 35.2 1.10526315789474 105 57 98.9 3 1 282 650 754 RYH26309.1 MAG: hypothetical protein EON65_14755 [archaeon] diamond 315 58.2 1 Archaea               archaeon
28020236 28020236 PRJNA1197996_S_NODE_25605_length_247_cov_0.885057_g25551_i0 PRJNA1197996 25605 247 0.885057 2.18609079 archaeon 1906665 Archaea Archaea 46.6 1.98e-4   NR RYG99971.1 1906665 g25551 i0 67.7 0.376518218623482 31 10 37.7 0 247 155 50 80 RYG99971.1 MAG: hypothetical protein EON65_49805 [archaeon] diamond 93 46.6 1 Archaea               archaeon
28240914 28240914 PRJNA1197996_S_NODE_6646_length_379_cov_5.000000_g6592_i0 PRJNA1197996 6646 379 5 18.95 archaeon 1906665 Archaea Archaea 79 1.35e-16   NR RYG65160.1 1906665 g6592 i0 72.5 0.807387862796834 51 14 40.4 0 3 155 21 71 RYG65160.1 MAG: acyl-CoA desaturase, partial [archaeon] diamond 306 79 1 Archaea               archaeon
28430647 28430647 PRJNA1197996_S_NODE_18906_length_272_cov_1.160804_g18852_i0 PRJNA1197996 18906 272 1.160804 3.15738688 archaeon 1906665 Archaea Archaea 83.2 2.75e-16   NR RYG68167.1 1906665 g18852 i0 90.7 0.948529411764706 43 4 47.4 0 271 143 412 454 RYG68167.1 MAG: S10 family peptidase [archaeon] diamond 258 83.2 1 Archaea               archaeon
28556983 28556983 PRJNA1197996_S_NODE_29427_length_227_cov_4.298701_g29373_i0 PRJNA1197996 29427 227 4.298701 9.75805127 archaeon 1906665 Archaea Archaea 103 4.62e-27   NR RYH28466.1 1906665 g29373 i0 93.9 0.647577092511013 49 3 64.8 0 2 148 15 63 RYH28466.1 MAG: hypothetical protein EON65_12040 [archaeon] diamond 147 103 1 Archaea               archaeon
28651572 28651572 PRJNA1197996_S_NODE_20667_length_263_cov_2.315789_g20613_i0 PRJNA1197996 20667 263 2.315789 6.09052507 archaeon 1906665 Archaea Archaea 58.5 1.18e-8   NR RYY73917.1 1906665 g20613 i0 81.5 0.741444866920152 65 11 73 1 1 192 54 118 RYY73917.1 MAG: 50S ribosomal protein P1 [archaeon] diamond 195 58.5 1 Archaea               archaeon
29156954 29156954 PRJNA1197996_S_NODE_12169_length_314_cov_1.414938_g12115_i0 PRJNA1197996 12169 314 1.414938 4.44290532 archaeon 1906665 Archaea Archaea 101 1.34e-22   NR RYH29511.1 1906665 g12115 i0 74.6 0.640127388535032 67 17 64 0 2 202 375 441 RYH29511.1 MAG: hypothetical protein EON65_08255 [archaeon] diamond 201 101 1 Archaea               archaeon
29156955 29156955 PRJNA1197996_S_NODE_2309_length_532_cov_4.440087_g2258_i0 PRJNA1197996 2309 532 4.440087 23.62126284 archaeon 1906665 Archaea Archaea 142 3.1e-39   NR RYG66122.1 1906665 g2258 i0 75 0.496240601503759 88 21 49.1 1 2 262 120 207 RYG66122.1 MAG: hypothetical protein EON64_10490 [archaeon] diamond 264 142 1 Archaea               archaeon
29567081 29567081 PRJNA1197996_S_NODE_13150_length_306_cov_2.313305_g13096_i0 PRJNA1197996 13150 306 2.313305 7.0787133 archaeon 1906665 Archaea Archaea 102 5.470000000000001e-26   NR RYH12782.1 1906665 g13096 i0 51.2 0.823529411764706 84 41 82.4 0 3 254 20 103 RYH12782.1 MAG: hypothetical protein EON65_37315 [archaeon] diamond 252 102 1 Archaea               archaeon
29724795 29724795 PRJNA1197996_S_NODE_26430_length_245_cov_1.069767_g26376_i0 PRJNA1197996 26430 245 1.069767 2.62092915 archaeon 1906665 Archaea Archaea 66.2 2.97e-12   NR RYY88864.1 1906665 g26376 i0 61.5 0.636734693877551 52 20 63.7 0 23 178 21 72 RYY88864.1 MAG: hypothetical protein EON63_01630 [archaeon] diamond 156 66.2 1 Archaea               archaeon
29914739 29914739 PRJNA1197996_S_NODE_11611_length_319_cov_1.455285_g11557_i0 PRJNA1197996 11611 319 1.455285 4.64235915 archaeon 1906665 Archaea Archaea 134 8.66e-36   NR RYH27215.1 1906665 g11557 i0 77.3 2.15360501567398 75 17 70.5 0 7 231 237 311 RYH27215.1 MAG: fatty acid hydroxylase family protein [archaeon] diamond 687 134 1 Archaea               archaeon
29914748 29914748 PRJNA1197996_S_NODE_4031_length_444_cov_3.043127_g3977_i0 PRJNA1197996 4031 444 3.043127 13.51148388 archaeon 1906665 Archaea Archaea 99.8 5.74e-22   NR RYH22573.1 1906665 g3977 i0 79 0.871621621621622 62 12 41.9 1 429 244 243 303 RYH22573.1 MAG: hypothetical protein EON65_19030, partial [archaeon] diamond 387 99.8 1 Archaea               archaeon
30198688 30198688 PRJNA1197996_S_NODE_9912_length_335_cov_1.923664_g9858_i0 PRJNA1197996 9912 335 1.923664 6.4442744 archaeon 1906665 Archaea Archaea 58.9 2.03e-7   NR RYH21159.1 1906665 g9858 i0 60.5 0.385074626865672 43 17 38.5 0 3 131 291 333 RYH21159.1 MAG: AAA family ATPase, partial [archaeon] diamond 129 58.9 1 Archaea               archaeon
30262353 30262353 PRJNA1197996_S_NODE_6532_length_381_cov_4.831169_g6478_i0 PRJNA1197996 6532 381 4.831169 18.40675389 archaeon 1906665 Archaea Archaea 50.8 9.73e-5   NR RYG67202.1 1906665 g6478 i0 55 0.31496062992126 40 18 31.5 0 2 121 119 158 RYG67202.1 MAG: hypothetical protein EON64_07960 [archaeon] diamond 120 50.8 1 Archaea               archaeon
30388898 30388898 PRJNA1197996_S_NODE_19653_length_268_cov_1.579487_g19599_i0 PRJNA1197996 19653 268 1.579487 4.23302516 archaeon 1906665 Archaea Archaea 104 1.51e-25   NR RYG65803.1 1906665 g19599 i0 83.6 0.682835820895522 61 10 68.3 0 261 79 152 212 RYG65803.1 MAG: hypothetical protein EON64_11160 [archaeon] diamond 183 104 1 Archaea               archaeon
30420430 30420430 PRJNA1197996_S_NODE_11013_length_324_cov_7.760956_g10959_i0 PRJNA1197996 11013 324 7.760956 25.14549744 archaeon 1906665 Archaea Archaea 62 4.37e-9   NR RYG70423.1 1906665 g10959 i0 49.2 0.546296296296296 59 29 53.7 1 318 145 133 191 RYG70423.1 MAG: hypothetical protein EON64_00220 [archaeon] diamond 177 62 1 Archaea               archaeon
30735955 30735955 PRJNA1197996_S_NODE_28934_length_237_cov_3.957317_g28880_i0 PRJNA1197996 28934 237 3.957317 9.37884129 archaeon 1906665 Archaea Archaea 116 4.209999999999999e-31   NR RYH30694.1 1906665 g28880 i0 93.8 0.810126582278481 64 4 81 0 1 192 88 151 RYH30694.1 MAG: 30S ribosomal protein S15 [archaeon] diamond 192 116 1 Archaea               archaeon
30767652 30767652 PRJNA1197996_S_NODE_6534_length_381_cov_4.071429_g6480_i0 PRJNA1197996 6534 381 4.071429 15.51214449 archaeon 1906665 Archaea Archaea 165 1.79e-49   NR RYH03712.1 1906665 g6480 i0 86 0.732283464566929 93 13 73.2 0 1 279 66 158 RYH03712.1 MAG: hypothetical protein EON65_47145 [archaeon] diamond 279 165 1 Archaea               archaeon
30988908 30988908 PRJNA1197996_S_NODE_23594_length_251_cov_0.865169_g23540_i0 PRJNA1197996 23594 251 0.865169 2.17157419 archaeon 1906665 Archaea Archaea 77 3.5e-16   NR RYH00022.1 1906665 g23540 i0 57.4 0.812749003984064 68 28 81.3 1 205 2 1 67 RYH00022.1 MAG: hypothetical protein EON65_49750 [archaeon] diamond 204 77 1 Archaea               archaeon
31114936 31114936 PRJNA1197996_S_NODE_10535_length_329_cov_2.089844_g10481_i0 PRJNA1197996 10535 329 2.089844 6.87558676 archaeon 1906665 Archaea Archaea 50.8 1.41e-4   NR RYG68491.1 1906665 g10481 i0 60 0.273556231003039 30 12 27.4 0 29 118 461 490 RYG68491.1 MAG: hypothetical protein EON64_05050 [archaeon] diamond 90 50.8 1 Archaea               archaeon
32190673 32190673 PRJNA1197996_S_NODE_13518_length_304_cov_1.324675_g13464_i0 PRJNA1197996 13518 304 1.324675 4.027012 archaeon 1906665 Archaea Archaea 79 8.25e-17   NR RYH28326.1 1906665 g13464 i0 68.6 0.503289473684211 51 16 50.3 0 303 151 31 81 RYH28326.1 MAG: hypothetical protein EON65_12645 [archaeon] diamond 153 79 1 Archaea               archaeon
32254206 32254206 PRJNA1197996_S_NODE_10638_length_328_cov_1.839216_g10584_i0 PRJNA1197996 10638 328 1.839216 6.03262848 archaeon 1906665 Archaea Archaea 147 2.3e-41   NR RYG68748.1 1906665 g10584 i0 91.2 1.86585365853659 68 6 62.2 0 1 204 207 274 RYG68748.1 MAG: hypothetical protein EON64_04460 [archaeon] diamond 612 147 1 Archaea               archaeon
32538869 32538869 PRJNA1197996_S_NODE_10879_length_326_cov_1.217391_g10825_i0 PRJNA1197996 10879 326 1.217391 3.96869466 archaeon 1906665 Archaea Archaea 71.2 6.02e-12   NR RYH27446.1 1906665 g10825 i0 50 0.662576687116564 72 36 66.3 0 9 224 246 317 RYH27446.1 MAG: sulfite exporter TauE/SafE family protein [archaeon] diamond 216 71.2 1 Archaea               archaeon
32632991 32632991 PRJNA1197996_S_NODE_7860_length_360_cov_1.655052_g7806_i0 PRJNA1197996 7860 360 1.655052 5.9581872 archaeon 1906665 Archaea Archaea 94 1.45e-19   NR RYH25142.1 1906665 g7806 i0 56.3 0.666666666666667 80 34 66.7 1 360 121 448 526 RYH25142.1 MAG: hypothetical protein EON65_15985 [archaeon] diamond 240 94 1 Archaea               archaeon
32759187 32759187 PRJNA1197996_S_NODE_7700_length_363_cov_1.037931_g7646_i0 PRJNA1197996 7700 363 1.037931 3.76768953 archaeon 1906665 Archaea Archaea 91.7 1.16e-19   NR RYH05309.1 1906665 g7646 i0 70.1 0.553719008264463 67 18 55.4 2 360 160 128 192 RYH05309.1 MAG: hypothetical protein EON65_45060 [archaeon] diamond 201 91.7 1 Archaea               archaeon
32853562 32853562 PRJNA1197996_S_NODE_19000_length_271_cov_2.393939_g18946_i0 PRJNA1197996 19000 271 2.393939 6.48757469 Candidatus Methanophaga sp. GoMg3.2 2081356 Archaea Archaea 45.1 0.00792   NR NQE52868.1 2081356 g18946 i0 38.4 0.808118081180812 73 36 73.1 4 2 199 235 305 NQE52868.1 hypothetical protein [Candidatus Methanophaga sp. GoMg3.2] diamond 219 45.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae Candidatus Methanophaga Candidatus Methanophaga sp. GoMg3.2
32853568 32853568 PRJNA1197996_S_NODE_8380_length_353_cov_2.403571_g8326_i0 PRJNA1197996 8380 353 2.403571 8.48460563 Nitrososphaerales archaeon 2268197 Archaea Archaea 43.5 0.0351   NR MEM2210550.1 2268197 g8326 i0 55.9 0.288951841359773 34 15 28.9 0 9 110 130 163 MEM2210550.1 dual specificity protein phosphatase 23 [Nitrososphaerales archaeon] diamond 102 43.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;